Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq80 280 2e-70 seq49 203 4e-47 seq9 122 1e-22 >seq80 Length=10124391 Score = 280 bits (310), Expect = 2e-70 Identities = 665/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| |||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 479312 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 479371 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| ||||||| ||| ||| | | || |||| || | || |||| Sbjct 479372 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGCGCAGCA---TCCAGTTCAAGTCACCCG 479428 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||||||||||||| || |||| || | Sbjct 479429 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 479488 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||| | || || |||||||||| Sbjct 479489 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATTGCTTGCATGTCGG 479548 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | | |||||||| | | | | || | || || || | || | ||||| | || Sbjct 479549 ACATATCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 479608 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| | Sbjct 479609 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 479668 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | ||| || || || | Sbjct 479669 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 479728 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| | |||||| ||| |||| | | Sbjct 479729 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAACT 479788 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 479789 TTCCATTCACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 479848 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| | || ||| || | ||| |||| | || || || || |||| Sbjct 479849 CCGTTTCTAGGTTATTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 479908 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | || | | || Sbjct 479909 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTC 479968 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| | Sbjct 479969 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 480028 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 ||||||||| | | |||| ||||||||||| |||||| || | || || |||| Sbjct 480029 CGCTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAATCACCG 480088 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 |||||| || | || || | ||| ||| ||||| | ||| || | |||||||| Sbjct 480089 CGGCCAAAAAGGA-TTC--CTCTGATTTTGAATCCACGTGAATGCAATAGAAATTCTGAG 480145 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | || ||||||||||| | || || | ||| || || || || || ||||| | || Sbjct 480146 GCATATAAATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 480205 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || ||||| ||||| || ||| || | || || || ||||| | Sbjct 480206 AATATGCTATTGGAAACTCTGCCTCTTCCTTACTAAGGGGTTCTACAATATATTTGCGCT 480265 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || |||||||| | |||| Sbjct 480266 TCTTGATGAAAGAAGCACAATCACTGGTCATGTTTATGTAG 480306 >seq49 Length=12320750 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||| ||||| || | | Sbjct 2443913 CAAAGAGAGTGAGGCAGGATATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 2443972 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| |||||||| |||| |||||| ||||| || || | || || || ||| Sbjct 2443973 ACTTGTAACACCCTTCGTCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 2444032 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||| || | ||||||||| ||||| || || | Sbjct 2444033 GTCCCAGCTGGGTGATGTTTATCTTATCCTTATAGGCAGGCTGGACTACAACCCCATGGT 2444092 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 2444093 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 2444152 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||| ||||| || | Sbjct 2444153 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGCGTTCAGCAACT 2444212 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | ||||| || |||| Sbjct 2444213 CTCTTACATCTTGGGTCTCCAC 2444234 Score = 113 bits (124), Expect = 5e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||| | || | ||| |||||||||| Sbjct 2441305 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACCTCCT-- 2441362 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| | || || ||||| || ||||| || ||||| Sbjct 2441363 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCA 2441421 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| || | | |||||| || || || | || || | || ||||| | Sbjct 2441422 TTGGGGTGTGAGACAATCTCAGTACTGTTCTCAATCTCTGACCCAGAGACCTTCCAGGAG 2441481 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 2441482 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 2441524 >seq9 Length=27858397 Score = 122 bits (134), Expect = 1e-22 Identities = 418/640 (65%), Gaps = 15/640 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||||| | | || || | | | Sbjct 19782040 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 19782099 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 19782100 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 19782159 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || | || | || || | || |||| || || Sbjct 19782160 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 19782219 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 19782220 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 19782279 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 19782280 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 19782337 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 19782338 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 19782396 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 19782397 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 19782451 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 19782452 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 19782510 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 ||||||| | || || | || || ||||| || | || || || || ||| Sbjct 19782511 AGTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGATGCTCAATGCCGCTCTTCTGGGGTG 19782570 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 19782571 TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCT 19782630 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 19782631 GAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 19782670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578419939692800