Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq82 262 5e-65 seq66 132 7e-26 seq133 129 8e-25 seq114 120 4e-22 seq71 107 3e-18 seq4 104 3e-17 >seq82 Length=8814989 Score = 262 bits (290), Expect = 5e-65 Identities = 623/936 (67%), Gaps = 34/936 (4%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT---TGTGACATAACTCCCATTT 39326 ||| ||||||||||| || | ||| ||| ||| || || ||| | | |||||| Sbjct 1280985 TTAGAAGTCAACATCCAAGGTAAAGGAATTCTCTGTCGGACTG-GACGTCATTCCCATCC 1281043 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || | || | | ||||| || || ||||| || ||||| | ||| ||| | Sbjct 1281044 TCTGATACTTGCCTAGTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC-AGTGAAATAGCCT 1281102 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| ||||| | | | | || |||| || | || || | Sbjct 1281103 CCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAA 1281162 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| || ||||| | ||| ||||||| | |||||||| || ||||| | Sbjct 1281163 GTCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCT 1281222 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC-TACGGCCTCTGTT-ATTAT 39564 |||| || |||||||| || ||||| | ||| |||| || | ||| ||||| Sbjct 1281223 CCACTGTCAGGGCCTCCGTGAGGAACTCGTGTTC--TGTCCTAGCTGCACTGACGATTAT 1281280 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | ||| || || || || | | ||||| ||||| | |||||| || Sbjct 1281281 TTCTTTGACTCTCTGCTCCGAACGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAA 1281340 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||| |||| ||||| ||||| ||||| | ||| || ||||||||||| || | ||| Sbjct 1281341 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACAT 1281400 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || || || || |||||||| |||| | |||||||| |||||||||||||| ||||| Sbjct 1281401 GAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 1281460 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTT 39801 |||| ||||| || || | | |||||||| | | || || | | |||| Sbjct 1281461 CGCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCG 1281520 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| || |||||||||| |||||| ||| || | ||||| ||||| | Sbjct 1281521 CAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAGGAA 1281580 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||| | |||||||| || || || || | ||||| | |||||| ||||| Sbjct 1281581 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCATTTCAGAATG 1281640 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 |||||||| | || || || || || || ||| | | ||||| |||| || Sbjct 1281641 TATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACGGGCTTCCGTAA--------TC 1281692 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 |||| |||| |||||||| ||||| | |||||| || ||| | || || Sbjct 1281693 TGAA-------------CCAAGTTTTCATTTACTATGCTATCACTTGCTGCAGAGAAAGC 1281739 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || ||| | | ||| || | || || || ||| | |||| | || || Sbjct 1281740 CAGAACACACGAAGTGAAACATCTCTCTTCAGGCTTCAGGGCTTCCCAGGGCTGAATGTC 1281799 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || || | || | || ||||||||||| || || ||||| || || || ||||| | Sbjct 1281800 CTTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCTTATACATCTG 1281859 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| | |||||| |||| || ||||| || ||||| Sbjct 1281860 CCAAACATCACGGTATTCGATAGGAAAGATGACAAA 1281895 >seq66 Length=17242564 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||||||||| |||||||| || || || |||| Sbjct 10223918 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTT 10223977 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 10223978 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 10224037 Query 39759 CAACAA 39764 | |||| Sbjct 10224038 CTACAA 10224043 >seq133 Length=6119822 Score = 129 bits (142), Expect = 8e-25 Identities = 248/358 (69%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCA 37404 ||| || |||||||| ||| ||| ||| || || || |||||| | ||| ||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAA-TCC-CTTTCAGTGTCATCTAAAACTTGAACTTCC 1720725 Query 37405 TTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTT 37464 | | || || ||| ||||||||| | | || ||||| || |||| ||| ||| | || Sbjct 1720724 TCTATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTG 1720665 Query 37465 ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCT 37524 | || || || ||| ||| ||| | ||| | || |||| ||| || ||||||||| Sbjct 1720664 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1720605 Query 37525 TCATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGA 37581 ||||| || || || |||||||||| || |||| || ||| || || | ||| Sbjct 1720604 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1720545 Query 37582 GCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGT 37641 |||| ||| ||||| || || || | || ||| |||| |||||||| | ||| | Sbjct 1720544 GCTACTCTCCCATAGCACCCATTAGGAAGAGCGATCTGAATGTCTGTTTTCA-CAAGAG- 1720487 Query 37642 CTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 |||||||| ||| | | || || || | || || |||| ||||| |||||||| Sbjct 1720486 CTTTCTCCATAGGTGGTACTGTGTATTCACAGGCACTGTATAGGTCATAGCCCGCGGC 1720429 >seq114 Length=7505490 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| |||||||| ||||| || || || | ||| || || ||||| | Sbjct 217251 CACCACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 217310 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 217311 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 217370 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 217371 CTAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 217421 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || ||||||||||| ||||| | || Sbjct 195375 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 195434 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 195435 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 195494 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 195495 TTTCTTATACCAT 195507 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 193143 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 193202 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || |||||||| |||||||||||||| || || ||||| || | || | | Sbjct 193203 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTATGGTTT 193262 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| ||| || || | || || |||| Sbjct 193263 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCCTCAGGAA 193313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 204653 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 204712 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | || || ||||||| || Sbjct 204713 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 204772 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 204773 TCCAGGTAAATAGC 204786 >seq71 Length=10149521 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| || ||||||||||| || || | || || Sbjct 1782286 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 1782227 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 1782226 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1782167 Query 39761 AC 39762 || Sbjct 1782166 AC 1782165 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487 ||||| | |||||||| |||||| || || |||||||| || || |||||||| || Sbjct 1794511 AATCCAAGTTCTGAAAGCAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACA 1794452 Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTC 39534 ||||||||||| ||||| |||||| | || || |||| |||||| Sbjct 1794451 CAATTCATTCCGATGAGGCCAACTGGCAAGGCTTCTGTTAAAAACTC 1794405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || || | Sbjct 1777939 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1777883 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || || || | | | | || ||||||| | || ||| |||| Sbjct 1777882 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 1777823 Query 40107 ATATATCTAC 40116 ||| ||| || Sbjct 1777822 ATAAATCAAC 1777813 >seq4 Length=32345528 Score = 104 bits (114), Expect = 3e-17 Identities = 239/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 14664409 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 14664468 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| |||| | | || ||||| || |||| ||| ||| | || | Sbjct 14664469 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 14664528 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || || || ||| ||| ||| | ||| | || ||| ||| || ||||||||||| Sbjct 14664529 TTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAACAACATTTCCTCTATAATCTTC 14664588 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || || |||| ||||| || |||| || ||| || || | ||||| Sbjct 14664589 ATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 14664648 Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643 || ||| ||||| || || | || ||| |||| ||| |||| | ||| | || Sbjct 14664649 TACTCTCCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTCTTTTCA-CAA-GGGCT 14664706 Query 37644 TTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 |||||| ||| | | || ||||| || || || |||| ||||| |||| ||| Sbjct 14664707 TTCTCCATAGGTGGTACTGTGTAATCATAGGCACTGTATAGGTCATAGCCCGTGGC 14664762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894477951520