Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq82 147 2e-30 seq25 131 1e-25 seq94 123 2e-23 seq66 107 2e-18 seq197 86.0 5e-12 seq71 86.0 5e-12 >seq82 Length=8814989 Score = 147 bits (162), Expect = 2e-30 Identities = 388/590 (66%), Gaps = 28/590 (5%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| | ||| | ||||| ||||| || ||||| |||| Sbjct 1281895 TTTGTCATCTTTCCTATCGAATACCGTGATGTTTGGCAGATGTATAAGAAAGCGGAGGCT 1281836 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || || |||||||| || || | || | | || ||| | ||| | ||| || Sbjct 1281835 TCCTTCTGGACAGCTGAGGAGCTGGACCTTTCCAAGGACATTCAGCCC--TGGGAAGCCC 1281778 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || |||| | | ||| | || | ||| |||| || | ||| || || || Sbjct 1281777 TGAAGCCTGAAGAGAGATGTTTCACTTCGTGTGTTCTGGCTTTCTCTGCAGCAAGTGATA 1281718 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | ||||| |||||||| |||||| || ||||| ||||| | Sbjct 1281717 GCATAGTAAATGAAAACTTGGTTC----------------AG----ATTACG-GAAGCCC 1281679 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | | ||| ||||| || ||||||||| | ||||| || ||||| |||||| ||||||| | Sbjct 1281678 GTTATTTCTATGGCTTCCAAATTGCCGTGGAAAACATACATTCTGAAATGGACAGTCTCC 1281619 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 | || || || ||||| |||||| | || | | | | || ||||| | || | Sbjct 1281618 TCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTCCTCTTCAATGCCAGTGAGA 1281559 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-AATTCAAAT--G 44114 |||| ||| | | || | ||||| |||||| | |||| || |||| | Sbjct 1281558 CAGTGCCTTCTGTAAAGAAGGCGGCAGATTGGGCCTTGCGCCGGATCGAAGACAAAGAGG 1281499 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | | | |||||||| | || || ||||| | | |||||| || |||||||| || | Sbjct 1281498 CTACGTACGGAGAACGTGTCGTAGCCTTTGCCGCAGCGGAAGGAATCTTCTTTTCTGGTT 1281439 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||||| | |||| ||| | ||||||||||| | ||| | || | || ||||| | Sbjct 1281438 CTTTTGCATCTGTATTGTGGCTCAAGAAACGAGGACTCATGTCCGGCCTCACATTTTCCA 1281379 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||| | || || | || || || ||||| || || ||||| ||| || Sbjct 1281378 ATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTG 1281329 >seq25 Length=19491731 Score = 131 bits (144), Expect = 1e-25 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | || ||||| | || ||| | | Sbjct 12196053 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATAAGAAAACT--GGTAAATTGGT 12196110 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || |||| |||||||| |||| || |||||||| ||| | | | Sbjct 12196111 ATTTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGATGACGG 12196170 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | ||| ||| | |||||||| || || ||| ||||||| ||||||||||| Sbjct 12196171 ACTTGGACAACATGTCCCAATGTTACATCCCACTTCAGAAGAACTAACCATTGCTGGCAT 12196230 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || ||||| ||||||| || ||| ||||| |||| || Sbjct 12196231 GACCTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTA 12196290 Query 47440 TTTTCATG 47447 ||| || Sbjct 12196291 CCTTCCTG 12196298 >seq94 Length=7997885 Score = 123 bits (136), Expect = 2e-23 Identities = 236/345 (68%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 77341 GTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCA 77397 ||||||| ||| ||||| || ||||||| || || ||| | | ||| | |||||| Sbjct 6292321 GTCCAGCACCATGAAGTCCTCTTTGTTGATCACCT---CCTTCCCTGTGCTGGTCCTCCA 6292265 Query 77398 GCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTC 77457 || ||| ||||||| | | ||||| ||||| | |||||||| || ||||||||||| Sbjct 6292264 TCCACTCTTCTTCCAGCTGTGCACCCAATTAGTGATGCCATTGATAGTAAACATGCTGTC 6292205 Query 77458 TGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGC 77517 |||||||| |||| ||| ||||| || | ||| || |||| | |||||| | || Sbjct 6292204 TGTGTAGAGAACCAACTTATTGATGTTCTGAGCCTTTGCCTGTTCGATGGCTTTGCAGGC 6292145 Query 77518 AGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAG 77577 || || || || || | |||||||| ||| |||| ||||| | | ||||| | Sbjct 6292144 TGCATGAATCTCTGCTCTTTGGTTTGTTTGTCGCCCAGGAAGTCTAATTCCTACATTTAA 6292085 Query 77578 CGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGA 77637 || || ||||| || || || || || ||||| || || | || || Sbjct 6292084 AGGATGGCCTGGCCCCCAGTAAACACCGATTCCTGCTCGAGCCCTCCTCCGCCCATTACT 6292025 Query 77638 TAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 |||| |||||||| |||||||| | || | || ||||| || Sbjct 6292024 GGAGCAGCAGCCGTCCGTGTAGACGATGACAGAGTGCCCCATATA 6291980 >seq66 Length=17242564 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 10226018 CGGTTTAGCCAAGAAGTTCAGATTACG-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 10225960 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 10225959 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 10225902 >seq197 Length=2958280 Score = 86.0 bits (94), Expect = 5e-12 Identities = 197/290 (68%), Gaps = 10/290 (3%) Strand=Plus/Minus Query 77263 GTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGGATGTGCAGCCAGACAACCTC 77322 ||| || || ||||||||| | |||| | ||||| || | |||| ||| || || Sbjct 2635434 GTCAGCTTCTTCATTGCCTATAAATCCCGAATGTCCAGGAACATGCATCCACTGAATGTC 2635375 Query 77323 CAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTC 77381 || || || |||||| | || ||||| || ||||||| || || ||| Sbjct 2635374 CATGCCCTGGACAAGCCTGTCCAGTTCCACGAAGTCCTCTTTGTTGATCACCT---CCTT 2635318 Query 77382 CGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTCTTA-ACCCACTTAGTCACACCAT 77438 | | ||| |||||| || |||| ||||||| |||| ||||| ||||| | |||| Sbjct 2635317 CCCTGTGCTTGTCCTCCATCCATTCTTCTTCCAGC-CTTACACCCAATTAGTGATGCCAT 2635259 Query 77439 TGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTT 77498 |||| || ||||||||||| ||||||| |||| ||| |||| || | ||| |||| Sbjct 2635258 TGATAGTAAACATGCTGTCCGTGTAGAGAACCAACTTACTGATGTTCTGAGCCTTCGCTT 2635199 Query 77499 GTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGT 77548 ||| | ||| || | || || || | || | | |||||||| ||| Sbjct 2635198 GTTCGATGGCTCTGCAGGCTGCATGAA--TCTGTTCTTTGGTTTGTTTGT 2635151 >seq71 Length=10149521 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 1798354 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 1798413 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 1798414 AACGAGTTTCAGAGTATCAGCG 1798435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 1774188 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCC 1774247 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 1774248 TCCTTCTGGACAGCAGAAGAGGT 1774270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447920216340