Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq58 91.5 1e-13 seq83 82.4 6e-11 >seq58 Length=13669011 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || || ||||| || |||||| Sbjct 13148011 CCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACA 13147952 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| ||||| || || || || ||||| || || || | | | ||| Sbjct 13147951 CCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACG 13147892 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 || || || ||||| |||| || || || | ||||| Sbjct 13147891 TAGAACTGGCAAAGGGCATGGCACGGGGGTAGGGCCAT 13147854 >seq83 Length=9572586 Score = 82.4 bits (90), Expect = 6e-11 Identities = 213/321 (66%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 || |||| | ||||| || |||| ||||| || || || || |||| | |||||| Sbjct 1005370 AAGTAGCCATTTCCATTTTAATAGTGGGATGGGGACTGTAGC-CTTCAATCTGAAAGTCT 1005428 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || || || || ||||| ||| ||||| || ||||| || || Sbjct 1005429 TCAGCCTTGAAGTCATCGATTTTCTCAACTTTTCCAAGGATTTTGAGCTTTGGGAAAGGC 1005488 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | | | || |||||| | || | ||| ||||||| | |||| ||| ||| Sbjct 1005489 CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATATGTGCA 1005548 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | | || | |||| || || ||||||||||| |||||||| Sbjct 1005549 TCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAG 1005608 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| || || || || ||||| || | ||||| |||||| ||||| || || Sbjct 1005609 GTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCCGTCTCCTGACCTC 1005668 Query 111862 TGATATAGCTGACATGATAGT 111882 || || ||||| || || ||| Sbjct 1005669 TGGTACAGCTG-CAGGACAGT 1005688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391937632235884