Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq58 147 2e-30 seq83 132 4e-26 seq46 104 2e-17 seq28 102 7e-17 seq4 98.7 8e-16 >seq58 Length=13669011 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 13148014 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 13147955 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 13147954 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13147895 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| |||||||| || || |||||||| Sbjct 13147894 ACGTAGAACTGGCAAAGGGCATGGCACGGGGGTAGGGCCATGAG 13147851 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 13144800 CATCTCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 13144741 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 13144740 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 13144681 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 13144680 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 13144633 >seq83 Length=9572586 Score = 132 bits (146), Expect = 4e-26 Identities = 349/525 (66%), Gaps = 12/525 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| || | || | || ||||| | |||||| | || | || |||||||| Sbjct 1005479 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 1005537 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || || ||||||| |||| ||| | || || || | || || |||| ||| | Sbjct 1005538 AAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 1005597 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| ||||| || | |||||||||||||| |||| || | || ||| || Sbjct 1005598 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCCGT 1005657 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || ||||||||||| ||||| || || || || || ||||||| || || || | Sbjct 1005658 CTCCTGACCTCTGGTACAGCTG-CAGGACAG-TCATGGTTCATCACGTAGAAGTGGCAAA 1005715 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAG------GCCCAAGTCTTTGGGGTTCCAGGCGC 30131 ||| |||||| | || || | || | | ||| || | ||||| || | Sbjct 1005716 GGGCATGGCACAGGGGCAGGGTGGTGGGGTATGAGAGGAAGATCTTACGATTCCAAGCAC 1005775 Query 30132 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30191 | ||||| | |||||||| |||||| | |||| ||| | | |||||||| | Sbjct 1005776 GTAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTT 1005835 Query 30192 GATCCACCCCCATCCCCGAGT-AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30250 | || || || || || | | | | || || |||| | || | ||| || Sbjct 1005836 GGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTTGGCCACCAAAAGC 1005895 Query 30251 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAAGCCCCT 30309 |||||||| || | || || | || | || || ||||| || ||| | || Sbjct 1005896 CTCCACTGAAAGCTATAAACTAGGCCTAAATCCCCTTCTTCTCTGGTGGAGGGTACCAGG 1005955 Query 30310 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 | ||||||| ||||||| ||| |||| ||| |||||||| || || Sbjct 1005956 C-TGTCCAAGAAGTCTCGGGACCCGTAGGCATCCCAGATTTTCAC 1005999 >seq46 Length=11947515 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 6164774 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 6164833 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||| | || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 6164834 TAAAGGTCGATTCGTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 6164893 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 6164894 CTGTTTACCTTCTACTGAAGAAGTTGTGGTCA 6164925 >seq28 Length=22384124 Score = 102 bits (112), Expect = 7e-17 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || | || || || ||||| |||| || || ||||| | Sbjct 15516655 ATGAGCTCCCTGTGGAGGTTCCGTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 15516714 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 15516715 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATT 15516774 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| |||||||| || | ||||| | | || | || | || || | Sbjct 15516775 CTGTTTCCCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACTTGTATTCGTTCCT 15516834 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 110612 || || ||| |||| ||||| || ||||| || | |||||||||| ||||| Sbjct 15516835 GAG---CG-AGG--GCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG 15516883 >seq4 Length=32345528 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 27012270 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 27012211 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||| |||||| || | |||||||||||||| || |||||||| ||||||| || Sbjct 27012210 TAATGGTCGATTCTTCTCTGAAATGGAGAACCAAGTTTTCCTACCCATAATCACCAAATT 27012151 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 27012150 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 27012119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406302140217456