Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq84 95.1 8e-15 seq33 82.4 5e-11 >seq84 Length=11797838 Score = 95.1 bits (104), Expect = 8e-15 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 34487 TAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTC 34546 |||| |||| |||| || |||||| || || || ||||| || || || || || | Sbjct 5420814 TAAG-CGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGC 5420756 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 || | ||||| || ||||| |||||||| || || | ||| ||||| || || | |||| Sbjct 5420755 GCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCT 5420696 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 ||||||| |||| || | || || | || ||||| | |||||| |||| | Sbjct 5420695 CCTTGTCCTGGATC-TTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAG 5420637 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| || |||||||| Sbjct 5420636 GTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 5420596 >seq33 Length=16598743 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| | |||||| | ||| |||||| ||||||||||||||| || || | Sbjct 8627184 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAG 8627125 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | | ||| |||| || || ||||| || | | || ||||| || | Sbjct 8627124 ACAGAGTACGTCCATTTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAG 8627065 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | ||| |||||||| |||||| Sbjct 8627064 GAATTCCTTCCTTGTCCTGGATCTT 8627040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723201940644