Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq20 105 6e-18 seq34 86.0 5e-12 >seq20 Length=22150888 Score = 105 bits (116), Expect = 6e-18 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTAC 27028 ||||| ||| || | || ||||||| || || || || |||||||||||| | || || Sbjct 5019512 TTTTACTTTGTAGGTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCAC 5019571 Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 || || ||||| || ||| | || |||| || || || || || || || || Sbjct 5019572 CCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGA 5019631 Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || || || || ||| | | || | || |||||||| ||||||| | Sbjct 5019632 AGGCATCCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCG 5019691 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | || ||||||||||| || || ||||||||| | || |||| | ||| || | Sbjct 5019692 CACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAG 5019751 Query 27209 GGGTGGC 27215 ||||||| Sbjct 5019752 GGGTGGC 5019758 >seq34 Length=14701056 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| || | || || || ||||| |||| Sbjct 8730183 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTGTCACCCTGGAGGTGGA---GTCC 8730239 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | || |||| | || || || || || || |||||||| || || || Sbjct 8730240 AGTGACACCATCGAGAACATGAAGGCCAAGATCCAGGATAA-GAAGGCATCCCCCCTGAC 8730298 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | | || | || |||||||| |||||||| | || |||| |||||| Sbjct 8730299 CAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCACACTCTTTCTGATTAC 8730358 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| | || |||||||| | || |||| | | | || |||||||| Sbjct 8730359 AACATCTAGAAAGAGTCGACACTGCACCTGGTCCTCCATCTGAGGGGTGGC 8730409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909331951360