Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq83 163 3e-35 seq58 159 3e-34 >seq83 Length=9572586 Score = 163 bits (180), Expect = 3e-35 Identities = 406/612 (66%), Gaps = 27/612 (4%) Strand=Plus/Plus Query 6425 TGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACG 6484 || || | ||| ||||| | | ||||| || | | |||||||||||| || Sbjct 1005399 TGGGGACTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCGATTTTCTCAACT 1005458 Query 6485 GCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGC 6544 || || |||||||||| ||||| || | | |||| || ||||| || ||| Sbjct 1005459 TTTCCAAGGATTTTGAGCTTTGGGAAAGGCCTTGATTCTCCCTGAAGCTGCATTTTCAGC 1005518 Query 6545 CGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGA 6604 |||| ||||| | |||||| ||||| ||||| ||||| || || || || || || Sbjct 1005519 AGCTCAATGTGATCCAGGTAAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGC 1005578 Query 6605 ACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAAC 6664 || || || || ||||||||||| |||||||| || || || || |||||||| Sbjct 1005579 TTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAG 1005638 Query 6665 GGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTC 6724 | ||| | | ||| |||||| || | || || |||| ||||||||| || ||| Sbjct 1005639 GACACACTCAGGCCCCCGTCTCCTGACCTCTGGTACAGCT-GCAGGACAG-TCATGGTTC 1005696 Query 6725 GCGACGTAGAATTGGCAGAGGGTGTGGCAC-------GGGGGGAGCGCCATCAGAGGGAG 6777 |||||||| ||||| |||| |||||| ||| || | | || ||||| || Sbjct 1005697 ATCACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTGGGGTATGAGAGGAAG 1005756 Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGT 6837 || ||| | ||||| || | | | ||| |||||||| |||||||| || | || Sbjct 1005757 AT-CTTACGATTCCAAGCACGTAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGT 1005815 Query 6838 GTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAAT-------AGTCCGCTTCGC 6890 ||| ||||| | ||||| ||||| |||| || || |||| | ||| | || Sbjct 1005816 GTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTT 1005875 Query 6891 TCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGC 6950 | || | ||| | || | |||||||| || | || || |||| || || | Sbjct 1005876 T------GTATTTGGCCACCAAAAGCCTCCACTGAAAGCTATAAACTAGGCCTAAATCCC 1005929 Query 6951 C--CTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTC 7008 | || ||| | | ||| | || | |||||| |||||||| ||||||| || || Sbjct 1005930 CTTCTTCTCTGGTGGAGGGTA--CCAGGCTGTCCAAGAAGTCTCGGGACCCGTAGGCATC 1005987 Query 7009 CCAGATCTTCAC 7020 |||||| ||||| Sbjct 1005988 CCAGATTTTCAC 1005999 Score = 163 bits (180), Expect = 3e-35 Identities = 406/612 (66%), Gaps = 27/612 (4%) Strand=Plus/Minus Query 34325 GTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCT 34384 ||||| |||||||| || ||||||| |||||||| |||||| | || | ||| | Sbjct 1005999 GTGAAAATCTGGGATGCCTACGGGTCCCGAGACTTCTTGGACAGCCTGG--TACCCTCCA 1005942 Query 34385 CGGGAGGAG--GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGG 34442 | ||| || || || || |||| || || | || |||||||| | || | ||| Sbjct 1005941 CCAGAGAAGAAGGGGATTTAGGCCTAGTTTATAGCTTTCAGTGGAGGCTTTTGGTGGCCA 1005882 Query 34443 AGTATCGGGGGAGCGAAGCGGACT-------ATTCGGGACAGGGAGCGGACCAGCTGCAG 34495 | || | || | ||| | |||| || || |||| ||||| ||||| Sbjct 1005881 AATAC------AAAGATGTGGATTTAAATTTATTCAGGTCAAGGAGTAGACCAACTGCAA 1005828 Query 34496 TACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGG 34555 | ||||| ||||| | || |||||||| |||||||| ||| | | | || ||| Sbjct 1005827 AAGGTGATTGACACAATCAAAACCAACCCTGAAGACAGAAGAATCATTCTACGTGCTTGG 1005768 Query 34556 AACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCC-------GTGCCACACCCTCTGCCA 34608 || | ||| |||| ||||| || | | || ||| |||||| |||| ||||| Sbjct 1005767 AATCGTAAG-ATCTTCCTCTCATACCCCACCACCCTGCCCCTGTGCCATGCCCTTTGCCA 1005709 Query 34609 ATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGG 34668 |||||||| ||| || ||||||||| |||| || || | || |||||| ||| Sbjct 1005708 CTTCTACGTGATGAACCATGA-CTGTCCTGC-AGCTGTACCAGAGGTCAGGAGACGGGGG 1005651 Query 34669 GTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 | | ||| | |||||||| || || || || |||||||| ||||||||||| || | Sbjct 1005650 CCTGAGTGTGTCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACAT 1005591 Query 34729 CGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAA 34788 | || || || || || || || || ||||| ||||| ||||| |||||| | Sbjct 1005590 CACAGGCCTGAAGCCAGGTGACTCTGTACACACTTTGGGAGATGCACATATTTACCTGGA 1005531 Query 34789 CCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAA 34848 ||||| |||| ||| || ||||| || |||| | | || ||||| ||||||| Sbjct 1005530 TCACATTGAGCTGCTGAAAATGCAGCTTCAGGGAGAATCAAGGCCTTTCCCAAAGCTCAA 1005471 Query 34849 AATTATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGG 34908 ||| || || || |||||||||||| | | || ||||| | | ||||| Sbjct 1005470 AATCCTTGGAAAAGTTGAGAAAATCGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGG 1005411 Query 34909 GTACCGGCCGCA 34920 ||| | || || Sbjct 1005410 CTACAGTCCCCA 1005399 >seq58 Length=13669011 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| ||||||| ||||| || ||||||||||| |||| ||||| |||||||| | ||| Sbjct 13147842 GATGTCCCTCTCATGGCCCTACCCCCGTGCCATGCCCTTTGCCAGTTCTACGTGGTGAAC 13147901 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 13147902 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTC 13147961 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 13147962 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 13148002 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 13148002 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 13147943 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 13147942 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 13147883 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| ||||||||||| || ||||| ||||||| ||| Sbjct 13147882 CAAAGGGCATGGCACGGGGGTAGGGCCATGAGAGGGACATC 13147842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448253053728960