Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq58 138 8e-28 seq83 134 1e-26 >seq58 Length=13669011 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 13148014 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 13147955 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 13147954 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13147895 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| |||||||| || || |||||||| Sbjct 13147894 ACGTAGAACTGGCAAAGGGCATGGCACGGGGGTAGGGCCATGAG 13147851 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| || || || || || || || | || Sbjct 13144800 CATCTCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 13144741 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 13144740 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 13144681 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 13144680 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 13144633 >seq83 Length=9572586 Score = 134 bits (148), Expect = 1e-26 Identities = 352/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| || | || | || ||||| | |||||| | || | ||||||||||| Sbjct 1005479 TGGGAAAGGC-CTTGATTCTCCCTGAAGCTGCATTTTCAGCAGCTCAATGTGATCCAGGT 1005537 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| ||||| ||| | || || || | || || |||| ||| | Sbjct 1005538 AAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTG 1005597 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| ||||| || | |||||||||||||| |||| || | || ||| || Sbjct 1005598 CGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCCGT 1005657 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC----TCCATCGCTTACGTAAAACTGA 27339 | || ||||||||||| ||||| || || || || | |||| ||||| || || Sbjct 1005658 CTCCTGACCTCTGGTACAGCTG-CAGGACAG-TCATGGTTCATC----ACGTAGAAGTGG 1005711 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAG------GCCCAAGTCTTTGGGGTTCCAG 27393 || | ||| |||||| | || || | || | | ||| || | ||||| Sbjct 1005712 CAAAGGGCATGGCACAGGGGCAGGGTGGTGGGGTATGAGAGGAAGATCTTACGATTCCAA 1005771 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 27453 || | | ||||| | |||||||| |||||| | |||| ||| | | |||||| Sbjct 1005772 GCACGTAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGC 1005831 Query 27454 AGCTGATCCACCCCCATCCCCGAGT-AGTCTACCCTCATGTCCGTGTACTCTGCTCCGAA 27512 || || || || || || || | | | || || || |||| | || | || Sbjct 1005832 AGTTGGTCTACTCCTTGACCTGAATAAATTTAAATCCACATCTTTGTATTTGGCCACCAA 1005891 Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAAGC 27571 | ||||||| || || | || || | || | || || ||||| || ||| | | Sbjct 1005892 AAGCCTCCACTGAAAGCTATAAACTAGGCCTAAATCCCCTTCTTCTCTGGTGGAGGGTAC 1005951 Query 27572 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620 | | ||||||| ||||||| ||| |||| ||| |||||||| || || Sbjct 1005952 CAGGC-TGTCCAAGAAGTCTCGGGACCCGTAGGCATCCCAGATTTTCAC 1005999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369499688380508