Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq82 309 4e-79 seq133 158 2e-33 seq4 136 5e-27 seq114 129 8e-25 seq66 116 5e-21 seq30 100 4e-16 >seq82 Length=8814989 Score = 309 bits (342), Expect = 4e-79 Identities = 633/939 (67%), Gaps = 40/939 (4%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| ||||||||||| || | ||| ||| ||| || ||| | | |||||| | Sbjct 1280985 TTAGAAGTCAACATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCATTCCCATCCT 1281044 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| | || | | ||||| || || ||||| || ||||| | ||| ||| || Sbjct 1281045 CTGATACTTGCCTAGTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC-AGTGAAATAGCCTC 1281103 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 |||||| ||||||||||| || | | ||| || |||| || | || || || Sbjct 1281104 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 1281163 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 ||| ||||| |||||||| | || ||||||| | |||||||| || || || | Sbjct 1281164 TCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCTC 1281223 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 |||| || |||||||| || ||||| ||||| | | | ||| || ||||| Sbjct 1281224 CACTGTCAGGGCCTCCGTGAGGAACTCGTGTTCTGTCCTAGCTGCACTGACGATTATTTC 1281283 Query 48092 TGTTACCGTTTCCTC---AC-TTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 | | || | | ||| || || ||| | || ||||| ||||| | || |||| Sbjct 1281284 TTTGACTCTCTGCTCCGAACGTTTGTGTAG----CAGGTGTTTGAACATCAGGCAGGCAA 1281339 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 | ||||| || | ||| || ||||| ||||| | ||| || ||||||||||| |||| || Sbjct 1281340 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACA 1281399 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 | ||||| ||||| |||||||| |||| | || ||||| ||||||||||| || |||| Sbjct 1281400 TGAGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTT 1281459 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTC--TCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 | | || ||||| || || | | | |||||||| | || || |||| | |||| Sbjct 1281460 CCGCTGCGGCAAAGGC--TACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCG 1281517 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || |||||||| ||| |||||||||| |||||| ||| || | ||||| ||||| Sbjct 1281518 GCGCAAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAG 1281577 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 || | |||| ||| |||||||| |||||| || || | ||||| | |||||| || Sbjct 1281578 GAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCATTTCAGA 1281637 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| | || || || || || || ||| | | ||||| || ||||| Sbjct 1281638 ATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACGGGCTTCCGTAATCTG--- 1281694 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | |||| || ||||||||||| | |||||| || ||| | || Sbjct 1281695 ------------------AACCAAGTTTTCATTTACTATGCTATCACTTGCTGCAGAGAA 1281736 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | ||| | | ||| || | || | | |||| | |||| | || Sbjct 1281737 AGCCAGAACACACGAAGTGAAACATCTCTCTTCAGGCTTCAGGGCTTCCCAGGGCTGAAT 1281796 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | || | || ||||||||||| || || ||||| ||||| |||||||| Sbjct 1281797 GTCCTTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCTTATACAT 1281856 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| | ||||| ||||| ||| || || || ||||| Sbjct 1281857 CTGCCAAACATCACGGTATTCGATAGGAAAGATGACAAA 1281895 >seq133 Length=6119822 Score = 158 bits (174), Expect = 2e-33 Identities = 251/356 (71%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||||||||| ||| | || |||||||| |||||| | ||| ||||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAATCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 1720723 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | || || ||| ||||||||| | | || || || || |||| ||||||| | || | Sbjct 1720722 TATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTGAC 1720663 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 ||| || | ||||| ||| ||| | ||| | || |||| | |||||||||||||| Sbjct 1720662 TTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 1720603 Query 46056 ATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || |||| ||||| || |||| || || ||||| | ||||| Sbjct 1720602 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 1720543 Query 46113 TATTCTTCCATAACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCTCCT 46172 || ||| ||||| || || || | || ||| |||| |||||||| | ||| || Sbjct 1720542 TACTCTCCCATAGCACCCATTAGGAAGAGCGATCTGAATGTCTGTTTTCA-CAA-GAGCT 1720485 Query 46173 TTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226 |||||| ||| || | || || || | |||||||||| ||||| || || || Sbjct 1720484 TTCTCCATAGGTGGTACTGTGTATTCACAGGCACTGTATAGGTCATAGCCCGCGGC 1720429 >seq4 Length=32345528 Score = 136 bits (150), Expect = 5e-27 Identities = 248/356 (70%), Gaps = 19/356 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 14664409 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 14664466 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | || || || || |||| ||||||| | || Sbjct 14664467 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 14664526 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | ||| || | ||||| ||| ||| | ||| | || ||| | |||||||||||| Sbjct 14664527 ACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAACAACATTTCCTCTATAATCT 14664586 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||||||||| || |||| || || ||||| | ||| Sbjct 14664587 TCATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 14664646 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| ||| ||||| ||||| || | || ||| |||| ||| |||| | ||| Sbjct 14664647 GCTACTCTCCCATAGCACCCAGAA----GGAAGAGCTATCTGAATGTCTCTTTTCA-CAA 14664701 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220 |||||||| ||| || | || || || || |||||||||| ||||| || Sbjct 14664702 -GGGCTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACTGTATAGGTCATAGCC 14664756 >seq114 Length=7505490 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 193143 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 193202 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || | ||||| | Sbjct 193203 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTATGGTTT 193262 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || ||| ||| || | || || |||| Sbjct 193263 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCCTCAGGAA 193313 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | || Sbjct 195375 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 195434 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 195435 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 195494 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 195495 TTTCTTATACCAT 195507 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || ||||| || || ||| Sbjct 212443 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAGAGAAGGTTG 212502 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 212503 TACGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 212562 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 212563 ATATGCTGTGGTCTTTCAGCC 212583 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | ||| Sbjct 204653 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 204712 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || ||||||| || Sbjct 204713 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 204772 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 204773 TCCAGGTAAATAGCAAATGCCCCAGGTCG 204801 >seq66 Length=17242564 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||||||| Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGC 10224038 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| | Sbjct 10222191 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCCCATCCT 10222250 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 10222251 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 10222310 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 10222311 CATAAAGTCAAATGGATT 10222328 >seq30 Length=16613269 Score = 100 bits (110), Expect = 4e-16 Identities = 176/254 (69%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| |||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 1726930 TCCAGTGGAAGCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 1726873 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| ||| | | || || || || |||| ||||| | | || Sbjct 1726872 TCTATTTCTGGGTAAAATATGTGTTCACAAATGAGATGTGCAATTCGATCACACTTTTTG 1726813 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | | |||| | |||||||||||| Sbjct 1726812 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAATACCAACGTTTCCTCTATAATCT 1726753 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || | |||| ||||| || |||| || || ||||| | | | Sbjct 1726752 TCATCTATGACACTGGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGCA 1726693 Query 46111 GCTATTCTTCCATA 46124 |||| ||| ||||| Sbjct 1726692 GCTACTCTCCCATA 1726679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654316155520