Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq82 286 5e-72 seq114 132 7e-26 seq133 116 5e-21 seq66 116 5e-21 seq71 107 3e-18 seq4 104 3e-17 >seq82 Length=8814989 Score = 286 bits (316), Expect = 5e-72 Identities = 626/935 (67%), Gaps = 32/935 (3%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCT-TCT---TGTGACATAACTCCCATTT 46339 ||| ||||| ||||| || | ||| ||| ||| || || ||| | | |||||| Sbjct 1280985 TTAGAAGTCAACATCCAAGGTAAAGGAATTCTCTGTCGGACTG-GACGTCATTCCCATCC 1281043 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || | |||| | ||||| || || ||||| || ||||| | ||| ||| | Sbjct 1281044 TCTGATACTTGCCTAGTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC-AGTGAAATAGCCT 1281102 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| ||||| || | ||| || |||| || | || || | Sbjct 1281103 CCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAA 1281162 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 |||| ||||| |||||||| | ||| ||||||| | |||||||| || ||||| | Sbjct 1281163 GTCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCT 1281222 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT-ATTATC 46578 || | || |||||||| || ||||| ||||| | | | ||| | || ||||| Sbjct 1281223 CCACTGTCAGGGCCTCCGTGAGGAACTCGTGTTCTGTCCTAGCTGCA-CTGACGATTATT 1281281 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | | ||| | | ||| || || | || ||||| ||||| | || ||||| Sbjct 1281282 TCTTTGACTCTCTGCTCCGAACGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 1281341 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||| || | || || ||||| ||||| | ||| || ||||||||||| || | ||| Sbjct 1281342 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGACATG 1281401 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 ||||| || || |||||||| |||| || || ||||| ||||||||||| || ||||| Sbjct 1281402 AGTCCTCGTTTCTTGAGCCACAATACAGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 1281461 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTT 46815 | || || || || || | | |||||||| | || || || | |||| | Sbjct 1281462 GCTGCGGCAAAGGCTACGACACGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCGC 1281521 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 |||||||| ||| ||||||||| |||||| ||| || | ||||| ||||| || Sbjct 1281522 AAGGCCCAATCTGCCGCCTTCTTTACAGAAGGCACTGTCTCACTGGCATTGAAGAGGAAT 1281581 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 | |||| | |||||||| || || || || | ||||| | |||||| ||||| Sbjct 1281582 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTGTCCATTTCAGAATGT 1281641 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 |||||||| | || || || || || || ||| | | ||||| |||||||| || Sbjct 1281642 ATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAACGGGCTTCCGTAATCTGAAC---- 1281697 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 ||| || ||||| ||||| | |||||| || ||| | || ||| Sbjct 1281698 -----------------CAAGTTTTCATTTACTATGCTATCACTTGCTGCAGAGAAAGCC 1281740 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115 | ||| | | ||| || | || || | |||| | |||| | || || Sbjct 1281741 AGAACACACGAAGTGAAACATCTCTCTTCAGGCTTCAGGGCTTCCCAGGGCTGAATGTCC 1281800 Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || || | || | || |||||||||||||| || ||||| ||||| |||||||| | | Sbjct 1281801 TTGGAAAGGTCCAGCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCTTATACATCTGC 1281860 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || | |||||| |||| ||| ||||| || ||||| Sbjct 1281861 CAAACATCACGGTATTCGATAGGAAAGATGACAAA 1281895 >seq114 Length=7505490 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | || Sbjct 195375 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 195434 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 195435 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 195494 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 195495 TTTCTTATACCAT 195507 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 193143 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 193202 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| |||||||| |||||||||||||| ||||| ||||| || | ||||| | Sbjct 193203 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTATGGTTT 193262 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || ||| ||| || | || || |||| Sbjct 193263 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCCTCAGGAA 193313 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| |||||||| ||||| | || || ||||| || || || || || || Sbjct 217256 CTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGATG 217315 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 217316 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 217375 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || | |||| ||||| || |||||||||| Sbjct 217376 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 217421 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || ||||| || || ||| Sbjct 212443 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAGAGAAGGTTG 212502 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 212503 TACGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 212562 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 212563 ATATGCTGTGGTCTTTC 212579 >seq133 Length=6119822 Score = 116 bits (128), Expect = 5e-21 Identities = 242/356 (68%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 44363 TCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCCTC 44422 ||| || |||||||| ||| | || || | || ||||| | ||| |||||||| Sbjct 1720782 TCCAGTGGATCCAAAACCTCCTGAATCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 1720723 Query 44423 TAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTTAT 44482 || || || ||| ||||||||| | | || || || || |||| |||||| | || | Sbjct 1720722 TATTTCTGGGTAAAATATACGTTCACAAATGAGCTGTGCAATTCCATCACCCTTTTTGAC 1720663 Query 44483 TTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCTTC 44542 || || | ||||| ||| ||| | || | || |||| || || ||||||||||| Sbjct 1720662 TTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 1720603 Query 44543 ATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACCCGATCTAGGCGC 44599 |||||| || ||| |||| ||||| || |||| || | || || | || || Sbjct 1720602 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 1720543 Query 44600 TATTCTTCCATAACAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAACCGTCT 44659 || ||| ||||| || || || | || || |||| |||||||| | ||| | || Sbjct 1720542 TACTCTCCCATAGCACCCATTAGGAAGAGCGATCTGAATGTCTGTTTTCA-CAAGAG-CT 1720485 Query 44660 TTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCATATCCTGCCGC 44713 |||||| ||| || | || || || | |||||||||| ||||| || || || Sbjct 1720484 TTCTCCATAGGTGGTACTGTGTATTCACAGGCACTGTATAGGTCATAGCCCGCGGC 1720429 >seq66 Length=17242564 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| ||||| | ||| || ||||||||||| |||||||| ||||| || |||||| Sbjct 10223920 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTTTTG 10223979 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || || || Sbjct 10223980 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 10224039 Query 46774 ACAA 46777 |||| Sbjct 10224040 ACAA 10224043 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | |||||||||||||| ||||| |||||||| || || Sbjct 10225902 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10225961 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 10225962 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 10226007 >seq71 Length=10149521 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| || || |||||||| ||||| | || | Sbjct 1782288 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 1782229 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1782228 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1782169 Query 46772 CGAC 46775 | || Sbjct 1782168 CCAC 1782165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| || ||| | Sbjct 1774271 TACCTCTTCTGCTGTCCAGAAGGAGGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 1774212 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 1774211 GTACTGGATTGGAAAGATGACAAATC 1774186 >seq4 Length=32345528 Score = 104 bits (114), Expect = 3e-17 Identities = 215/315 (68%), Gaps = 15/315 (5%) Strand=Plus/Plus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| |||||||||| || || ||| |||| |||| | | || || || || Sbjct 14664448 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 14664507 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 |||| |||||| | || | || || | ||||| ||| ||| | || | || | Sbjct 14664508 AATTCGATCACCCTTTTTGACTTCGAACTTTTCTTTGCCAAAATTAAACAGTACAACAAC 14664567 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAG 44578 || || || ||||||||||||||||| || ||| |||||||||| || |||| Sbjct 14664568 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCCACATCTATGAAGTGTTTTGC 14664627 Query 44579 AGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATAC 44634 || | || || | || |||| ||| ||||| ||||| || | || || Sbjct 14664628 AGCCAAGCCAGAACGTGGAGCTACTCTCCCATAGCACCCAGAA----GGAAGAGCTATCT 14664683 Query 44635 GAATATCTGTTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACT 44692 |||| ||| |||| | ||| | |||||||| ||| || | || ||||| || ||||| Sbjct 14664684 GAATGTCTCTTTTCA-CAA-GGGCTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACT 14664741 Query 44693 GTATAAATCATATCC 44707 ||||| ||||| || Sbjct 14664742 GTATAGGTCATAGCC 14664756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919535317760