Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq70 188 1e-42 >seq70 Length=10430177 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| ||||| || |||||||||||| || ||||| |||||||| ||||| Sbjct 4186805 GTCTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGAACATCACACACT 4186864 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| || || Sbjct 4186865 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCGAAG 4186924 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 4186925 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 4186984 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||||||||| |||| |||| Sbjct 4186985 ACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAATTATCT 4187033 Score = 134 bits (148), Expect = 2e-26 Identities = 212/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| | |||| ||||||||||| | Sbjct 4185168 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 4185227 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || |||||| ||| || || || ||||| || || ||||| |||||||||||| Sbjct 4185228 AGGCAGTCTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 4185287 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || || || | || | Sbjct 4185288 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTA 4185347 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| || || |||||||| |||| | | | |||| Sbjct 4185348 CCATGGTCTCCCCAAAGATGGCGTCTGGTCGAGGCTTTTCTACCAGCAGAGCAGGATACA 4185407 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||| | || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 4185408 GCTCTATGGCGTCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 4185467 Query 8583 CTGT 8586 |||| Sbjct 4185468 CTGT 4185471 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 4187851 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 4187910 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 4187911 AAATTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCATATTTGTGCCCTGGGGATC 4187970 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| |||||||||||| | | | ||| || |||| Sbjct 4187971 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 4188030 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | | |||| || ||||| Sbjct 4188031 TTTCCTCCCTGAAAAATGAGAA 4188052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||||||||| || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 4188460 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 4188519 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || |||||| | | || || | Sbjct 4188520 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 4188579 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||||||||||| || ||||| |||| Sbjct 4188580 GGCGGGCTGTCAATCAGATGTGATCTCGCTGA 4188611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716861853118720