Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20 159 8e-34 seq53 149 2e-30 seq84 145 2e-29 seq34 134 3e-26 seq259 123 6e-23 seq27 111 4e-19 seq10 109 1e-18 seq4 107 5e-18 seq22 86.0 2e-11 >seq20 Length=22150888 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 5019523 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 5019579 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 5019580 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 5019637 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || |||||||| |||||||| | ||||| Sbjct 5019638 CCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCT 5019697 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| ||| |||| ||||| || || ||||| || || Sbjct 5019698 CTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 5019739 >seq53 Length=16102195 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| ||| ||| || Sbjct 15465499 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 15465440 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||| | || ||||| |||||||| |||| ||| ||||| ||||||||| Sbjct 15465439 ACAACAGAAAACATAAAGGCCAAGATCCAGGACAAGGAAGTAATTCCTCCTGACCAGCAA 15465380 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || ||||| ||||||||| | ||| | | || | ||| | Sbjct 15465379 AGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACCACAACATT 15465320 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 15465319 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 15465285 >seq84 Length=11797838 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 5419541 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 5419598 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 5419599 ACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGC 5419658 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 5419659 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 5419718 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 5419719 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGA 5419759 Score = 145 bits (160), Expect = 2e-29 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTC 178011 || |||||||| |||||||| || ||| |||||||||||||||| || ||||| | Sbjct 5420401 ACCATCACCCTGGAGGTGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCC 5420458 Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071 |||| || ||||| ||||| || |||||||| | || ||||| ||||| |||||||| | Sbjct 5420459 AGGATAAGGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGG 5420518 Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| | |||||| | ||||| ||| |||| ||||| || || ||||| || || Sbjct 5420519 AAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 5420576 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||| | |||||||| || ||| Sbjct 5420599 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 5420656 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 5420657 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGC 5420716 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 5420717 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 5420776 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 5420777 TCCAGAAAGAATCCACTCTGCACCTGGT 5420804 >seq34 Length=14701056 Score = 134 bits (148), Expect = 3e-26 Identities = 154/206 (75%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||||| |||||||| | ||| Sbjct 8730186 CAGATCTTCGTGAAGACCCTGACTGGCAAGACTGTCACCCTGGAGGTGGAGTCCAGTGAC 8730245 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||| | || ||||| ||||| ||||||| ||||| || |||||||| Sbjct 8730246 ACCATCGAGAACATGAAGGCCAAGATCCAGGA-TAAGAAGGCATCCCCCCTGACCAGCAG 8730304 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| ||||| || |||||| | ||||| ||| || Sbjct 8730305 AGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCACACTCTTTCTGATTACAACATC 8730364 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || |||||||| || || Sbjct 8730365 TAGAAAGAGTCGACACTGCACCTGGT 8730390 >seq259 Length=1197011 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| || || ||||| |||||||| ||| ||| || Sbjct 605709 CAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCGAGGTTGAACCCTCGGAT 605767 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| |||||||| |||||||| | || |||||||| Sbjct 605768 ACAAAAGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGCAG 605827 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | || | ||| | Sbjct 605828 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTTTGACCACAACATT 605887 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | || || || ||| |||| |||||||| Sbjct 605888 CAAAAGGGGTCCACTCTTCATATTGTGTTGAGACT 605922 >seq27 Length=17078927 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| ||| || || ||||| || || ||||| ||| |||| ||| ||||| Sbjct 16540131 CAGATTTTCAGGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTCAGAT 16540072 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || || ||||||||||||||||| ||||||||| Sbjct 16540071 ACAATAGAAAATGTAAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCTGACCAGCAA 16540012 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || || ||||| ||| | | || || ||| | Sbjct 16540011 AGACTGATCTTTGCTGGCAAGCAACTGGAGGATGGCCATACTTTGTCTGACTACAACATT 16539952 Query 178104 CAAAAAGAATC 178114 ||||| || || Sbjct 16539951 CAAAAGGAGTC 16539941 >seq10 Length=27321270 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||| |||||||| ||| ||| || Sbjct 20770552 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCGTCAATCTCGAGGTCGAACCCTCGGAT 20770611 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||| | |||||||| ||||| | ||||||| Sbjct 20770612 ACGATAGAAAACGTAAAGGCCAAGATCCAGGACGAGGAAGGAATTCCTCCTGCCCAGCAA 20770671 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || | || || ||||||||| | ||| | | || | ||| Sbjct 20770672 AGACCGAGTTTTGCTGGCCAGCAACTGGAAGATGGACGTACTTTGTCTGAACACAACACT 20770731 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || | || |||||||| |||||||| Sbjct 20770732 GAAAAGGAGTCCATCCTTCATCTTGTGTTGAGACT 20770766 >seq4 Length=32345528 Score = 107 bits (118), Expect = 5e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||| | || ||||| |||| |||||||| ||||| || || ||| Sbjct 25269279 GACACCATCGAGAACATGAAGGCCAAGATCGAGGATAAAGAAGGCATCCCCCCTGATCAG 25269338 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || |||||||| |||||||| | |||| | | ||||| | | Sbjct 25269339 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCCTTCTGATTACAGC 25269398 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 25269399 ATCCAGAAAGAGTCGACCCTGCACCTGGT 25269427 >seq22 Length=18397422 Score = 86.0 bits (94), Expect = 2e-11 Identities = 131/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCG 177990 ||||| ||||| ||||| || || | |||||| |||||||| || ||| || |||| Sbjct 1474238 GTGAAGACTCTGACAGGCAAGACCACCACCCTTGAGGTGGA--GCCCAGTGACGCCATAA 1474181 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 ||||||||||| || || || ||||| || || |||| || |||||||| | || | Sbjct 1474180 AGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCTGCCTGACCAGCAGCATCTGA 1474121 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | || || ||||| |||| ||| || ||||| | || | ||| |||| |||| Sbjct 1474120 TTTTTATGGGCCAACAGTGGGAAGCTGGTAGAACTCT--CAGACAACAACATCCAGAAAG 1474063 Query 178111 AATC 178114 | || Sbjct 1474062 AGTC 1474059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705474759592