Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq24 93.3 9e-14 seq5 91.5 3e-13 seq1 91.5 3e-13 seq20 89.7 1e-12 >seq24 Length=41976827 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 2624963 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 2625022 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 2625023 GCCCCACGTTGGGC 2625036 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2594414 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2594355 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2594354 CCCCACGTTGGGC 2594342 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2606463 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2606522 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2606523 CCCCACGCTGGGC 2606535 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2589752 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2589693 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2589692 CCCACGTTGGGC 2589681 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2611080 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2611139 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2611140 CCCACGTTGGGC 2611151 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2616812 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2616871 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2616872 CCCACGTTGGGC 2616883 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2620625 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2620684 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2620685 CCCACGTTGGGC 2620696 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2623231 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2623290 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2623291 CCCACGTTGGGC 2623302 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 2629537 TTGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 2629596 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 2629597 GCCCCACGTTGGGC 2629610 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2634364 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2634423 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2634424 CCCACGTTGGGC 2634435 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||||| Sbjct 2601472 GCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2601413 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2601412 CCCACGTTGGGC 2601401 >seq5 Length=107836144 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 37806160 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 37806219 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 37806220 CCCCACGTTGGGC 37806232 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 37819352 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 37819293 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 37819292 CCCACGTTGGGC 37819281 >seq1 Length=275406953 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 98241397 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 98241456 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 98241457 CCCCACGTTGGGC 98241469 >seq20 Length=51049468 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 30373671 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 30373612 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 30373611 CCCACGTTGGGC 30373600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057749917279580