Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 264 8e-66 seq20 174 1e-38 seq5 123 2e-23 >seq3 Length=223996068 Score = 264 bits (292), Expect = 8e-66 Identities = 318/431 (74%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || | ||||||||||||||||||||| |||||| || || | ||||| ||||| Sbjct 145552532 TTTTCTTTTACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 145552588 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | || ||||||| | |||||| || || || | |||| |||| ||||||| | ||| Sbjct 145552589 CCTGTATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 145552648 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| |||||||| || | | |||||| | | |||||| || ||| | ||| Sbjct 145552649 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 145552708 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 |||| ||| | |||||| | ||| ||| || ||||| |||| |||||||| |||| Sbjct 145552709 TCTTCCTTA---ATAGAACTGCTTCCTGCTATTCAAACCATATCTAGTTTATTTGTTAAT 145552765 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || || ||| || |||||||||||| | ||| || || | ||||||||||| Sbjct 145552766 GCTGGTTGCACGATAATTTCTAAAGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 145552825 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 || ||| | ||||| ||||| | |||||| | ||||| ||| ||||||||| | Sbjct 145552826 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAAATCTATCTTTTAAAGATTGA 145552885 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||||| || ||| | |||||| |||| ||||||||||||| ||||||||||| ||| Sbjct 145552886 TTCTTTTCTGGAGTGTTGAACCACCTCTTCCTACCCATAATCACCAAATTCTGTTTGTCT 145552945 Query 4399 GGTACAGAAGA 4409 ||| || || Sbjct 145552946 TCTACTGACGA 145552956 Score = 219 bits (242), Expect = 3e-52 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||| ||||||||||||||||||| | ||| || || || |||| Sbjct 153890490 ATTAATTGTTCTTTTCATATGCTTCAAATTTGTACTTAATGCCTTTTTCGTCCTGGACAT 153890549 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| || || || | ||||| |||||||| Sbjct 153890550 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 153890609 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || || Sbjct 153890610 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 153890669 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 153890670 GCTTGTTTATGGATTCCTTGCAGACAGAACTTCCTCCCACTATCCAAACCATGTCTACTT 153890729 Query 4208 TATT 4211 |||| Sbjct 153890730 TATT 153890733 >seq20 Length=51049468 Score = 174 bits (192), Expect = 1e-38 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 24333263 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 24333204 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 24333203 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 24333144 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||||| ||| || ||||| |||||||| | Sbjct 24333143 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGGTGGTCCACCTTCCCTTCAGCATTGAT 24333084 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 24333083 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 24333024 Query 27167 ATTGCG 27172 |||||| Sbjct 24333023 ATTGCG 24333018 >seq5 Length=107836144 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 77990194 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 77990253 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 77990254 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 77990313 Query 4285 AGCTCC 4290 | ||| Sbjct 77990314 GGTTCC 77990319 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 77994470 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 77994529 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 77994530 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 77994578 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| |||| |||||| |||||||| Sbjct 77987834 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 77987893 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | ||| Sbjct 77987894 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 77987953 Query 4176 AC 4177 || Sbjct 77987954 AC 77987955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 77983934 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 77983993 Query 4028 TAGAAAGAACACTTGGATAT 4047 || |||||| ||||||| Sbjct 77983994 CCAAAGGAACACCTGGATAT 77984013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361227134573966