Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq19 277 2e-69 seq8 118 1e-21 seq10 95.1 1e-14 >seq19 Length=60445663 Score = 277 bits (306), Expect = 2e-69 Identities = 264/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 50711687 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 50711628 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 50711627 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 50711568 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||| | |||| || |||||| ||| ||| | | |||||| || Sbjct 50711567 CACACCGGGGACCACGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 50711508 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| | ||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 50711507 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 50711448 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| || || |||||||| || || || ||||||| |||| Sbjct 50711447 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCTGGTCGGACGTACTTC 50711388 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 50711387 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 50711350 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || || || ||||| ||||| | ||| |||| Sbjct 50711109 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACGACCAGGCCCCGGGGTCCGAGGC 50711050 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| |||||| | |||||||| || |||| Sbjct 50711049 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGCGATGCTA 50710990 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 50710989 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 50710930 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | || || || |||||||||||||| Sbjct 50710929 CCAGAGGACGCGCGGAGAAGGCGTACAC 50710902 >seq8 Length=90615088 Score = 118 bits (130), Expect = 1e-21 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 30020688 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCGTCGCGCCTGC 30020746 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 30020747 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 30020806 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| |||||| Sbjct 30020807 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 30020865 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 30020866 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 30020924 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||||||||||||| | |||||| || |||||| Sbjct 30020925 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 30020970 >seq10 Length=86377204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| |||| || | |||||||| | | ||||| | | ||||| ||||||||| Sbjct 16797596 GGGGAAGCGGGGCATCTGTATCGGGCTCAATGTCCAGGATTAGAAAGCGGCGGCTGTACC 16797655 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCG 83170 ||| || |||| ||||| | ||||||| || ||| || |||| || ||| | ||| Sbjct 16797656 TGCCCAAGGGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCC 16797715 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCG 83230 |||||||||| || |||||| |||| | ||| || || ||| | | | || Sbjct 16797716 CTGCGGCACACCAGACACCAGGGGATGAACCTGGGATCTTTCCCGAAGGCCGTGGCGGCG 16797775 Query 83231 TCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 || || ||| |||||||||| | ||| ||| |||||| Sbjct 16797776 TCACTGGGCATGCGCAGGGCCTCGCCAAGGCCGGCAAAGAGC 16797817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608755203958640