Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 6e-11 >seq11 Length=62170480 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 24997 CACAGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACAT 25056 ||||| ||| || | |||| | | |||| || ||||||||||| ||| | ||||| Sbjct 32766424 CACAGTAACGTTTTCCTTTTAAACCTTATAG-GTCAAAATGCAAATCTTCGTGAAAACCC 32766366 Query 25057 TGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGC 25116 |||| ||||| ||||| ||| || ||| ||| || || | | || | ||| Sbjct 32766365 TGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGG 32766306 Query 25117 AAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCA 25176 || || ||||| ||||| | ||| || || || || || |||||||| |||| Sbjct 32766305 CCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCA 32766246 Query 25177 AACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 | || |||||||| | ||| | | |||||||| || || ||||| || || || | Sbjct 32766245 AGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGC 32766186 Query 25237 ACATGGT 25243 || |||| Sbjct 32766185 ACCTGGT 32766179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410769434000924