Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 3e-12 >seq3 Length=223996068 Score = 87.8 bits (96), Expect = 3e-12 Identities = 642/995 (65%), Gaps = 111/995 (11%) Strand=Plus/Plus Query 228172 aataatttaacaaaatcgttaattaaattaa-atattagtaattgtaatataataaatgc 228230 ||||||| || | | | ||||||| | ||| |||||| | ||||| || ||| Sbjct 193549869 AATAATTAAAAATATTTATTAATTATAATAATATATTA-----TATAATAAAAAAAAAAT 193549923 Query 228231 tagttctttaaaaaatttaattaatttaaaagaattggatatatctaacaattataatat 228290 | | | |||||| | ||||||||||||| || | |||| || ||| | ||||| Sbjct 193549924 TTAATATATAAAAATATAAATTAATTTAAAAAAA----AAATATAAAATAATAA-AATAT 193549978 Query 228291 aaatatttCATCATTACCaaaaacattaat--taaattaaatat--tagttcatgtaata 228346 || || | || |||| |||| | || | ||| |||||||| || || | | || Sbjct 193549979 AATTAAATAATTATTATTAAAATAAATAGTCATAATTTAAATATAATAATTAAAA-ATTA 193550037 Query 228347 taaaaaatactaattttataattaatttagataatttGAA---AGAATTAGATA---TAT 228400 ||||||| |||||||| |||||| || ||||| | || | ||| | ||| ||| Sbjct 193550038 ATAAAAATATTAATTTTA--ATTAATATATATAATATAAATAAAAAATAAAATAAGATAT 193550095 Query 228401 CTAGAAATTTTAATATAAATATTTCATCATTACCAAAATC----ATTAA--TCAAATTAA 228454 || ||| || |||| ||||||| || || | ||||| ||||| | ||||||| Sbjct 193550096 -TAAAAAATTAAATAAAAATATT--ATAATAAATAAAATATAAAATTAAAATAAAATTAA 193550152 Query 228455 ------ATATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAATTTAGATAATT 228508 ||| || | || || || ||| ||| |||| || || ||| | |||||| Sbjct 193550153 TAAAATATAATATTAAATATTTAATTAAATATA-TAATAATAAAAATAAATATAATAATT 193550211 Query 228509 TGA-AAGAATTAGATATATCTAGAAATTT-TAATATAAATATTTCATCATT-ACCAAAAT 228565 | | |||| || ||| || | |||| ||||||||||||| || ||| | |||| Sbjct 193550212 TCATAAGA--TA-ATAAATTAATAAATAAATAATATAAATATTATATAATTAAATAAAAA 193550268 Query 228566 CATTGAT--TACATTAAATATTAATTCAT-GTTA--TATAAAACA--CACTAAT-TTTAT 228617 || || ||| |||||| ||| || ||| |||||| | | |||| ||| Sbjct 193550269 TATAAATAATACCAAAAATATAAATAAATAATTAATAATAAAATATTAAATAATAAATAT 193550328 Query 228618 AAATGATTTATATAATTTGAAGGAATTGGATATATCTAGAAATTATAATATAAATATTTC 228677 |||| || ||||| || | ||| |||| ||| | || | ||||||| Sbjct 193550329 AAATTATATATATTATATAAAG--------TATA-CTA------AAAAAAAAAATATTAT 193550373 Query 228678 ATCATTACCAAAATCATTAATCAAATTAAATATTAGTGATTGCGATATTAAA-AATACTA 228736 || |||| |||| ||| || ||| |||||||| || | |||||| |||| | Sbjct 193550374 ATAATTAAATAAATAATTTATATAATAAAATATTATAAATGAATACATTAAATAATAATT 193550433 Query 228737 ATTTTATAAATGATTTA-GATAATTTGAAAGAATTAGATATATCTAACAATTATAATATA 228795 | | ||||||| | || ||||| || | | |||| | ||| || || | |||| Sbjct 193550434 A-TGTATAAATATTATATGATAAATTTATATTATTA-----TTTTAATAA-TAAATTATA 193550486 Query 228796 AATATTTCATCATTACCAAAAACATTGACTACATTAAATATTAGTTCATGTAATATAAAA 228855 ||||| | || | || | ||| || | || |||||| || |||||| ||| Sbjct 193550487 AATATATAATAAATAATATAAATATAAAATA---TAAATA-------ATTTAATAT-AAA 193550535 Query 228856 AATACtaattttat-aattaatttagataatttgaaagaattagatatatctaaaaattt 228914 |||| || | ||| || | ||| | |||| || |||| | | || || | | | Sbjct 193550536 AATAATATATATATAAAATTATTAAAATAAAAAATAATTATTATAAAAATATATATAATA 193550595 Query 228915 taatataaatatttCATCATTACCAAAATCATTGATTACATTAAATATTAATTCATGTTA 228974 || ||||| |||| | || | | ||| || |||| || ||||||||| || || Sbjct 193550596 AAAAATAAAAATTTAA--ATAA--ATAATAATATATTAAATATAATATTAAT--AT-ATA 193550648 Query 228975 TATAAACCATACTAATTTTATA-AATGATTTAT-ATAATTTGAAAGAATTAGATATATCT 229032 |||| || |||| ||| ||| || ||| |||| || ||| ||| | | | | | Sbjct 193550649 AATAATAGATTATAATAAAATATAATAATATATAATAAATTTAAA-AATAATAAAAAAAT 193550707 Query 229033 AACAATTATAATATAAATATTTCATCATTACCAAATACATTAATTGAATTAAATATTAGT 229092 | ||||||| || || || | || |||| ||||| || || |||||||||| | Sbjct 193550708 ATAAATTATATTAAAATTAATAAAT-ATTA--AAATATATAAAAATAATTAAATATAA-- 193550762 Query 229093 TCGTGTTATATAAAAAATACTAATTTTATAATTAA 229127 ||||||||||| ||| | |||| ||| Sbjct 193550763 ------AATATAAAAAATTATAAAATAATAAATAA 193550791 Score = 86.0 bits (94), Expect = 9e-12 Identities = 541/832 (65%), Gaps = 100/832 (12%) Strand=Plus/Plus Query 228271 atatctaacaattataatataa-atatttCATC-ATTACCaaaaacatt--aat-taaat 228325 |||| ||| ||||| | |||| |||||| | |||| || || ||| ||| || || Sbjct 193549489 ATAT-TAATAATTAAATTATATTATATTTAAAATATTAAAAATAAAATTTAAATATATAT 193549547 Query 228326 taaatattagttcatgtaatataaaaaatactaattttataattaatttagataatttGA 228385 |||||| || | | ||||||||||||| ||| ||||| |||||| ||| | | | Sbjct 193549548 TAAATAATAATAAAAA-AATATAAAAAATAAATATTAAATAAT-AATTTATATATTATAA 193549605 Query 228386 AAGAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAA 228445 || | ||||| ||| | |||| ||||| ||| | || || |||| Sbjct 193549606 AATA------TATAT-----AATATAAATAAAAATA------CATAATAAATATAATTAT 193549648 Query 228446 TCAAATTAAATATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAATTTAGATA 228505 |||| || |||| | || | |||||||||||| ||||| | ||| |||||| | Sbjct 193549649 AAAAATATAAAATTATAAAATATAATATAAAAAATAATAATTAAAAAAT-AATTTATAAT 193549707 Query 228506 ATTTGAAAGAATTAGATATATCTAG--AAATTTTAATATAAATATTTCATCATTACCAAA 228563 ||| ||| || | | ||| || ||||| | |||||| ||| | || | ||| Sbjct 193549708 ATTATAAATAAATTAAAATAAATAATAAAATTATTATATAATTATATAATAAAATAAAAA 193549767 Query 228564 ATCAT----TGATTACATTAAATATTAATTCATGTTATATAAAACACACTAATTTTATAA 228619 | || | | || || |||||| ||| || ||||||||| ||||| |||| Sbjct 193549768 AAAATAAAATAAATAAATAAAATAT--ATTAATAATATATAAAA-----TAATTATATAT 193549820 Query 228620 ATGATTTATATAATTTGAAGGAATTGGATA-TATCTAG--AAATTATAATATAAATATTT 228676 | |||||||| || |||| ||| || || |||||||||| ||||| || Sbjct 193549821 ----TATATATAATAAAAAAAAATTAAATAATAATTATTAAAATTATAATG-AAATAATT 193549875 Query 228677 CATCATTACCAAAATCATTAATCAAATTAA-ATATTAGTGATTGCGATATTAAAAATACT 228735 | || | | |||||| | | ||| |||||| | ||| ||||| | | Sbjct 193549876 AAAAAT------ATTTATTAATTATAATAATATATTATATA-----ATAAAAAAAAAATT 193549924 Query 228736 AATTTTATAAATGATTTAGAT-AATTTGAAAGAATTAGATATATCTAACAATTATAATAT 228794 | | |||||| || || || ||||| ||| || | ||| | | || |||||| | Sbjct 193549925 TAATATATAAAA-ATATAAATTAATTTAAAAAAAAAATATAAAATAATAAAATATAAT-T 193549982 Query 228795 AAATATTTCATCATTACCAAAAACATTGACTACATTAAATAT--TAGTTCATGTAATATA 228852 ||||| || || |||| | ||| | | | || |||||||| || || | | || Sbjct 193549983 AAATAATT-ATTATTAAAATAAATAGTCA-TAATTTAAATATAATAATTAAAA-ATTAAT 193550039 Query 228853 AAAAATACtaattttataattaatttagataatttgaa---agaattagata---tatct 228906 ||||||| |||||||| |||||| || ||||| | || | ||| | ||| ||| | Sbjct 193550040 AAAAATATTAATTTTA--ATTAATATATATAATATAAATAAAAAATAAAATAAGATAT-T 193550096 Query 228907 aaaaattttaatataaatatttCATCATTACCAAAATCATTGATTACATTAAATATTAAT 228966 ||||| || |||| ||||||| || || | ||||| |||| | |||| |||||| Sbjct 193550097 AAAAAATTAAATAAAAATATT--ATAATAAATAAAATATAAAATTAAAATAAA-ATTAAT 193550153 Query 228967 ------TCATGTTATATA-------AACCATACTAATTTTATAAATGATTTATATAATTT 229013 | || ||| ||| || ||| |||| || |||| | | ||||||| Sbjct 193550154 AAAATATAATATTAAATATTTAATTAAATATA-TAATAATAAAAATAAATATAATAATTT 193550212 Query 229014 GA-AAGAATTAGATATATCTAACAATTA--TAATATAAATATTTCATCATTA 229062 | |||| || ||| || ||| || || ||||||||||||| || |||| Sbjct 193550213 CATAAGA--TA-ATAAAT-TAATAAATAAATAATATAAATATTATATAATTA 193550260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755404383468800