Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq13 114 1e-20 seq22 89.7 4e-13 seq14 89.7 4e-13 seq2 87.8 2e-12 seq1 86.0 5e-12 >seq11 Length=62170480 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| |||||||||||||| | |||||| ||| || Sbjct 32765723 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 32765782 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 32765783 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32765842 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32765843 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 32765902 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 32765903 CCGGTCAGGGTCTTCACAAAGATCTGCAT 32765931 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 32765951 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 32766010 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 32766011 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32766070 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32766071 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 32766130 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 32766131 CCGGTCAGGGTCTTCACGAAGATCTGCAT 32766159 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 32766179 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 32766238 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 32766239 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32766298 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32766299 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 32766358 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || || ||||| Sbjct 32766359 CCGGTCAGGGTTTTCACGAAGATTTGCAT 32766387 >seq13 Length=82951069 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 ||| ||| | || |||||||| || || ||||| || || |||||| |||||| | Sbjct 49683489 CCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCA 49683548 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| ||| | | | |||| ||||||||||| || || || |||||||||| |||| | Sbjct 49683549 GCTCTTTGCTGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGA 49683608 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||| || || | |||||| || ||||||||| | ||| | || |||| Sbjct 49683609 TTTTGGCTTTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGC 49683668 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || || ||||| |||||||| Sbjct 49683669 CCATCAGGGTCTTCACAAAGATCTGCAT 49683696 >seq22 Length=50780147 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | ||||||||| | || | || ||||| |||||||||||||| || | Sbjct 41548508 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 41548449 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || || || || ||| | |||| || | ||||| || ||||| Sbjct 41548448 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 41548389 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| || || || || || | ||| | || |||| | ||||||| Sbjct 41548388 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCGACC 41548329 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || ||||| || || || ||||||||||| Sbjct 41548328 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 41548282 >seq14 Length=62568341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | ||||||||| | || | || ||||| |||||||||||||| || | Sbjct 36062751 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 36062810 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || || || || ||| | |||| || | ||||| || ||||| Sbjct 36062811 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 36062870 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| || || || || || | ||| | || |||| | ||||||| Sbjct 36062871 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 36062930 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || ||||| || || || ||||||||||| Sbjct 36062931 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 36062977 >seq2 Length=248966461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || ||| |||||| | || ||| | || ||| |||| || || || || ||||||||||| Sbjct 209119492 ATTCTCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTT 209119433 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| ||| || | || |||||| || ||||||||| | ||| | Sbjct 209119432 GTCTCGGATTTTGGTTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAAT 209119373 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| |||| | || ||||| |||||||| Sbjct 209119372 GGTTTTGCCCATCAGGATCTTCACAAAGATCTGCAT 209119337 >seq1 Length=275406953 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| || || | || ||||| |||||||||||||| || || ||| || Sbjct 99428835 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 99428894 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | || || ||||| |||| || | ||||| || ||||| || || ||||| Sbjct 99428895 ATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 99428954 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || | || | ||| | || |||| | ||| |||| || || | Sbjct 99428955 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCAACCTTGAGAGTGAT 99429014 Query 118703 CGTTTTGCCGGTC-AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||| ||||| || |||||||||||||| Sbjct 99429015 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 99429051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801499574472