Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq17 105 8e-18 seq11 105 8e-18 seq20 100 3e-16 seq290 98.7 1e-15 seq3 98.7 1e-15 seq1 98.7 1e-15 seq13 96.9 4e-15 seq15 95.1 1e-14 seq10 86.0 7e-12 >seq17 Length=72251135 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| ||| || || || ||||| |||| | Sbjct 50453867 CCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 50453808 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || || | ||||||||| | || Sbjct 50453807 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50453748 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 50453747 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 50453688 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || |||||||||||||| |||||| Sbjct 50453687 TCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 50453640 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| |||||| || || ||||| |||| | Sbjct 50452528 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 50452469 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || || | ||||||||| | || Sbjct 50452468 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50452409 Query 43077 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||| | | || || || |||| || | | ||||| || | ||||| Sbjct 50452408 ATGC-CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 50452350 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || |||||||||||||| |||||| Sbjct 50452349 CTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 50452301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 50437546 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 50437487 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 50437486 TACTAACGAGGA 50437475 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 50440410 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 50440351 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 50440350 TACTAACGAGGA 50440339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 50340762 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 50340703 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 50340702 TACTAACGAGGA 50340691 >seq11 Length=62170480 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 32766196 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32766255 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || ||||| ||| ||| || || | | Sbjct 32766256 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 32766315 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || || || || Sbjct 32766316 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 32766375 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||||||||||| || Sbjct 32766376 GAAGATTTGCATTTTGAC 32766393 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27366552 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27366611 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 27366612 TACTAACGAGGAGTGA 27366627 >seq20 Length=51049468 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 29958859 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 29958800 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 29958799 ATACTAACGAGGA 29958787 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 30013190 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 30013249 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 30013250 ATACTAACGAGGA 30013262 >seq290 Length=5419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1606 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1665 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1666 TACTAACGAGGA 1677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2871 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2930 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2931 TACTAACGAGGA 2942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5010 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5069 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5070 TACTAACGAGGA 5081 >seq3 Length=223996068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 165158780 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 165158721 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 165158720 TACTAACGAGGA 165158709 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 167524917 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 167524858 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 167524857 TACTAACGAGGA 167524846 >seq1 Length=275406953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 110814739 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 110814680 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 110814679 TACTAACGAGGA 110814668 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 110887719 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 110887660 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 110887659 TACTAACGAGGA 110887648 Score = 96.9 bits (106), Expect = 4e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 110806016 TCTCC-CGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 110805958 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 110805957 ATACTAACGAGGA 110805945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| | |||||||||||||||||||||||| | ||||||| || ||||||||| Sbjct 43299170 TTGTCTCCCCATCAGGGAATCGAACCCTGGTCTCCCACCTGACAGGTGGGGATACTCACC 43299111 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| ||||| Sbjct 43299110 ACTATACTAAAGAGGA 43299095 >seq13 Length=82951069 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | | ||| |||| ||| ||| || || |||||||| || | | Sbjct 49683470 CCGCCTCGCAGACGAAGCGCCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 49683529 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||| || | | ||| || || ||||||||||| | || Sbjct 49683530 AGAGTGCGGCCATCCTCCAGCTCTTTGCTGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 49683589 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| |||||| ||||| || | | ||||| || | || || Sbjct 49683590 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTCTCAATGGTGTCACTGGGCTCGACC 49683649 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCC 43192 || | || ||||| |||||| | || ||||| |||||||| ||||| | | |||| Sbjct 49683650 TCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATCTCTGCGCC 49683705 >seq15 Length=80783214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5991175 CTCCCTGTCAGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5991234 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5991235 TACTAACGAGGA 5991246 >seq10 Length=86377204 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||| |||||||||||| |||| || || |||||||||| Sbjct 24023892 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTAACAGATGGGGATCCTCACCACTA 24023833 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 24023832 TACTAACGAGGA 24023821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571778530562480