Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq7 2522 0.0 seq13 145 5e-30 seq2 118 7e-22 >seq7 Length=100009711 Score = 2522 bits (2796), Expect = 0.0 Identities = 1584/1712 (93%), Gaps = 32/1712 (2%) Strand=Plus/Minus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 |||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| Sbjct 47638321 GTCCTAACTCCAGTCCCAGCATGATCAGCTGGTTTGCAGCGTCAGGTTACAGATCTCCAT 47638262 Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190 ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 47638261 CCACAAGGGTCCTAGGCAGGACTTGACTGAGGATATTTGTCTAGAGAAGAAATCTATCTT 47638202 Query 107191 TACCATCACTCTGGAGTTGAACTTGATGTTC--TG-----------GATTAGTTTGTAAT 107237 | ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 47638201 TGCCATCACTCTGGAGTTGAACTTGATGTTCATTGAGGATATTCCAGATTAGTTTGTAAC 47638142 Query 107238 TAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTC 107297 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 47638141 TAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTCCCTGTACCCAAACTCTA 47638082 Query 107298 CTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCAT 107357 |||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| Sbjct 47638081 CTGACCTCCCATCCCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGGCATCAT 47638022 Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417 |||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| Sbjct 47638021 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCTGTTGTTGCTCTGAGGCTTTCTCTCAGG 47637962 Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477 || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 47637961 TTGAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAAAGTCAGCGTTGT 47637902 Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537 |||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 47637901 AGGGACGTTTTGTACAAGAACCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 47637842 Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597 ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||| Sbjct 47637841 ATCACACGAGGGGACCAGGAAGCGGTGGTCCAGGCTCTCCTGGACAACCTGGAAGTCAAG 47637782 Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657 || ||||||| |||| |||||| |||||||||||||||||||||||| |||||||||| Sbjct 47637781 AAGAAGCGGTTGCCTTTCACTGACACCTATTACCTCAACATAACCAGGGACTGTGAGCAG 47637722 Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 47637721 TTTAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGCTAGACTTCCCC 47637662 Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 47637661 ATTGCATACTCGATGGTGGTGCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCT 47637602 Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 47637601 GTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGTGAAGTCCCCAGAAACTTTC 47637542 Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47637541 AAAGAGGCAGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 47637482 Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 47637481 GTCCCCGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCCGACCTGAACTGTATGGAAGAC 47637422 Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 47637421 TTGCTCCAGAGCTCGGTGCCATGGAAATACTTACTGAATACATGCGGGACAGACTTCCCC 47637362 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 47637361 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATG 47637302 Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137 ||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||| Sbjct 47637301 GAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACGAGGTGACA 47637242 Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197 |||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 47637241 GACAGACTGTCCCTAACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTTC 47637182 Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257 || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 47637181 ACTGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCCC 47637122 Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 47637121 AAATCCCAAAGACTGATTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 47637062 Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 47637061 GCCACCCTTCAGCGTGCTCCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATCAC 47637002 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 47637001 ATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGACCACGAGGGAGATGTC 47636942 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 ||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||| Sbjct 47636941 AGCATGGGGGCACCTTATGCACCCTGCTCGGGAATCCATCAGCGGGCCATCTGCATTTAT 47636882 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 47636881 GGGGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 47636822 Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617 || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 47636821 CCAAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTATTTACGCCATAAGGCCATC 47636762 Query 108618 TATGGGACTGAACTTTGAGCTGCACTGT------------------GGGCCAGGGAC-TG 108658 |||||||||||||||||||||| ||||| ||||||||||| || Sbjct 47636761 TATGGGACTGAACTTTGAGCTGTACTGTGGGCAGATTGATACCCGAGGGCCAGGGACATG 47636702 Query 108659 TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATC 108718 |||||||| | ||||||| | |||||||||| | |||||||||||| |||||||||||| Sbjct 47636701 TGCCAACAGGGCCAGGGCATGCTGGTACTGTTTAGGGTGGGGGACGGGGGCTGTGGAATT 47636642 Query 108719 CATGGCATCCCCCAGGGTCAGAGGGCTGCTTT 108750 |||||||||||||||||||||||||| ||||| Sbjct 47636641 CATGGCATCCCCCAGGGTCAGAGGGCGGCTTT 47636610 >seq13 Length=82951069 Score = 145 bits (160), Expect = 5e-30 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 108751 GATGGGGTCAGGATGTTGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCA 108810 ||| | ||||||||| ||||||||||||| | |||||||||||| ||| |||||||||| Sbjct 72030058 GATAGTGTCAGGATGCTGGCTCCAGGAGATGTCTGTTCACCCATTTCTTCTGGAGCTCCA 72030117 Query 108811 CATATGAGAGTGTTGGGTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863 | |||||| |||||||||| |||||||||||| ||||||| |||||||||||| Sbjct 72030118 CGTATGAGTGTGTTGGGTATGGTGATGTTTGGCCCCGAATCAACTTCTCTAAC 72030170 >seq2 Length=248966461 Score = 118 bits (130), Expect = 7e-22 Identities = 263/390 (67%), Gaps = 10/390 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 ||||| |||||||||||| || || || || || || || || ||||| ||| | || Sbjct 59820059 CCACTTAGTAAAGAAGAGGCGGAATTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 59820000 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | || ||| | Sbjct 59819999 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGTATT 59819940 Query 107808 CACGTGGATGTGAAGTCCCCAGAGA---CTTTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 ||||||||| || || ||||| | || | || | | ||| ||| Sbjct 59819939 CACGTGGATAGAAAATC---AGAGAAATCCTTTTTGGCTGCAGCTGTTGGCATCGCATCC 59819883 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 |||||| |||||||| | |||||| || ||| ||||| ||||| |||||| | Sbjct 59819882 TGCTTCAGTAATGTCTTTGTCGCCAGTCAGCTGGAGAGCGTGGTGTATGCGTCCTGGAGC 59819823 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || |||||||| ||||| ||| | ||| | || | | ||| | ||| |||| Sbjct 59819822 CGGGTTCAGGCTGACCTTAACTGCATGCAGGACCT-CTACCG-GCTGAATGCAGGCTGGA 59819765 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| ||||| | || || || || || ||||| || || ||| Sbjct 59819764 AGTACTTGATAAATCTCTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCA 59819705 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | |||||| |||||| |||| |||||| Sbjct 59819704 GGAAGCTCAAGCTGTTGATGGGTGAGAACA 59819675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348245599420884