Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 seq22 91.5 1e-13 seq14 91.5 1e-13 seq3 87.8 2e-12 seq1 87.8 2e-12 >seq15 Length=80783214 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 49189812 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 49189871 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 49189872 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 49189931 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 49189932 CCTGTCTCTGTCTGAGACTCAATGATGGC 49189960 >seq22 Length=50780147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| | || || || || Sbjct 41548279 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCC 41548338 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 41548339 TCGGATACAATTGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 41548398 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || | |||||| || ||||||| | | | ||| || || || Sbjct 41548399 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 41548457 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 41548458 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 41548499 >seq14 Length=62568341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| | || || || || Sbjct 36062980 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCC 36062921 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 36062920 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 36062861 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || | |||||| || ||||||| | | | ||| || || || Sbjct 36062860 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 36062802 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 36062801 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 36062760 >seq3 Length=223996068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| |||||||| || || || |||||||| | || || | |||||||| || |||| Sbjct 58613834 GGATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTTGCTGGCAAGCAACTGGA 58613893 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | ||| || ||| | | || ||||||||||| || || ||||||||||| || || Sbjct 58613894 AGA-TGGATGTCTTTGATCAACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGCT 58613952 Query 31405 TAGAC 31409 |||| Sbjct 58613953 GAGAC 58613957 >seq1 Length=275406953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCT-GACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||| ||||| || |||||||| |||||| || || ||||| || | ||||| || Sbjct 99429054 AAGATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTTGAGCC 99428995 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCC 31306 || || | | ||| || || | || | | ||| |||||||| | || || Sbjct 99428994 CTCGGATACAATAGAAGATGT--AATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCT 99428937 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGA 31365 |||||||| | || || || |||||||| || ||||||| | | | ||| || || Sbjct 99428936 GACCAGCAAAGACTGATCTTTGCTGGCAAGCAAGTGGAAGA-TGGACGTACTTTGTCTGA 99428878 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || ||||||||| | || | ||||| Sbjct 99428877 CTACAACATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGACT 99428833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735943010720