Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq21 210 3e-49 seq3 187 3e-42 seq15 140 4e-28 seq9 102 1e-16 >seq21 Length=49987992 Score = 210 bits (232), Expect = 3e-49 Identities = 236/316 (75%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || |||||||| ||| ||||||| | ||| ||| |||| | ||||||||| Sbjct 21377268 AGAAGCCATGACCAGCTGCACAGTTTCACCATAACAAAACATCTTCAAGATTCCTGACAA 21377327 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 | |||||||||||| | ||| | |||||||||| ||| | |||||||||| || Sbjct 21377328 GAACAAAATCCACAAACCAGAAAATAGGCCTGCTCCAAATTTGCCACAATCTCTCTTAGA 21377387 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 ||| |||||||| |||| | || |||| |||||| ||||| || ||| |||||| Sbjct 21377388 TTGCAGAGTATACACAGTTGAATCAGGAAATACTGCATGGGTCAGTATAAAATCTTGCAG 21377447 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGT 9631 || | || |||||| |||||||||||| |||||| || || | |||| ||||| | Sbjct 21377448 GACAATATATACATCACAGAAAGTAACAATGAAGGCCACAGTCAGCGCTTCCAACAGTAT 21377507 Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 || | || ||||||||||| || |||||||| |||||||||| |||||||| | || Sbjct 21377508 AAGTACAAAAAGCAGGTATGGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCATGTCTAA 21377567 Query 9692 AATCAAGCCTATAGAT 9707 ||||| || | |||| Sbjct 21377568 AATCAGACCAAAAGAT 21377583 Score = 107 bits (118), Expect = 3e-18 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAA 9289 ||||| |||| | ||| ||||| || || || | || || || |||| ||||||||| Sbjct 21376877 TTTCT-ATTAATTGCTTGCAAAATTTGCAA-AGGTATAA-AAGAGGTTGAAGATATCCAA 21376933 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||||| |||||| ||||| ||||| || ||||| || ||| ||| || ||||||| Sbjct 21376934 GTAGAGGCTGATAG-CGCTAATACATATTCCTCAGGTGACAGCCTATACATCAGTGAGTA 21376992 Query 9350 CGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACA 9399 | ||||||||| ||||||| |||||| | |||||| || | ||||| || Sbjct 21376993 TGAGTCATAGATGATGAATCTGCAGAAAAGAAGGGCTCCTACAGCAGCCA 21377042 >seq3 Length=223996068 Score = 187 bits (206), Expect = 3e-42 Identities = 156/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || ||||| | ||||||||| | ||||||| |||||||| |||||||||||||||||| Sbjct 153353635 TTTTTATTGACTGCTTCCAAAACCCGTAACAGGTGCAAGAAGAGATTGATGATATCCAAG 153353576 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| | || || |||||||| Sbjct 153353575 TAGAGGTTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 153353516 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || ||| | || ||||| |||| Sbjct 153353515 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCCCAGCGGCCAAGACCAACTCC 153353456 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 153353455 ACTGTCTCACT 153353445 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||| ||||||| |||||| | ||||| Sbjct 153350636 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAAAGTATATACAGTCAAACCAAGA 153350577 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||| ||||| Sbjct 153350576 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAGGTAAC 153350518 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 19112517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 19112458 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 19112457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 19112398 Query 36300 C 36300 | Sbjct 19112397 C 19112397 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 19110830 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 19110771 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | ||||||||||||||| |||||| Sbjct 19110770 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 19110725 Score = 100 bits (110), Expect = 4e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 153339522 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 153339463 Query 9907 TGGAGGAGCA 9916 |||||||||| Sbjct 153339462 TGGAGGAGCA 153339453 >seq15 Length=80783214 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 49181657 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 49181716 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 49181717 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 49181776 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 49181777 CTGTTTCTTATACCATA 49181793 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || ||||| || || || || | | Sbjct 49205812 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAAACGGCAATCCTTGCTGCCAGGA 49205871 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 49205872 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 49205931 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 49205932 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 49205977 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 49186639 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 49186698 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 49186699 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 49186758 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 49186759 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 49186818 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 49186819 GTTTATTCGA 49186828 >seq9 Length=94583238 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 74660337 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 74660278 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 74660277 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 74660219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127830343440