Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14 154 3e-32 seq22 150 4e-31 seq11 149 1e-30 seq4 145 2e-29 seq17 127 5e-24 seq1 125 2e-23 seq9 114 3e-20 seq3 107 4e-18 seq2 96.9 8e-15 seq8 91.5 3e-13 seq27 87.8 4e-12 >seq14 Length=62568341 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 36062769 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 36062828 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||| |||| || || || || || |||||||| |||||||| |||||||| Sbjct 36062829 AGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 36062888 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 36062889 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 36062948 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 36062949 CCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 36062981 >seq22 Length=50780147 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 41548490 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 41548431 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||| |||| || || || || || |||||||| |||||||| |||||||| Sbjct 41548430 AGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 41548371 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||| | ||||| || || ||||| || || || ||||| Sbjct 41548370 ATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 41548311 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 41548310 CCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 41548278 >seq11 Length=62170480 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || | ||| || || || | || || ||||||||||| || || ||||| Sbjct 32765705 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 32765764 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||| || || || || ||||| || |||||||| || ||||| || Sbjct 32765765 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 32765824 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| |||||||| ||||| || || || || || | ||| || || || || ||| Sbjct 32765825 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 32765884 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || || || || ||||| |||||||| Sbjct 32765885 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 32765931 >seq4 Length=119216639 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||| | | || || || || ||||| || |||||||| | ||| | |||||||| Sbjct 9844496 ACTAGACGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTCTTCC 9844437 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 9844436 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 9844377 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || |||||||||||| ||||| | || | | ||||| || || || ||||| Sbjct 9844376 ATCTTGGCCTTTACATTTTCTGTTGTATC-CGAGAGCTTGACCTCAAGAGTGATGGTCTT 9844318 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || | |||||||| ||| Sbjct 9844317 CCCCGTCAGGGTCTTCACGGAAATCTGCATCTTG 9844284 >seq17 Length=72251135 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || |||||||| ||||| | || |||| ||| Sbjct 40432648 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACATCCATCTTTCAGT 40432589 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || || || || || |||||||| | |||||| ||| |||| | | Sbjct 40432588 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTACCCTGGACC 40432529 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || | |||||||||||| || ||| || || ||||| | || || ||||| || Sbjct 40432528 TTGACCTTTACATTTTCTGTGGGATCCGAGGGCTCGACCTCAGGAGTGATGGTCTTCCCC 40432469 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || |||||||| ||| Sbjct 40432468 GTCAGGGTCTTCACGAAAATCTGCATCTTG 40432439 >seq1 Length=275406953 Score = 125 bits (138), Expect = 2e-23 Identities = 158/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTC-TACCGTCTTC 104409 |||||||| | || || || || ||||| || |||||||| | ||| | | || ||||| Sbjct 67187169 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACA-AGTACGTTCCATCTTC 67187111 Query 104410 TAGTTGTTTTCCAGCAAAAATT-AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCT 104468 ||||| || |||||||| ||| || || || | |||||||| |||||||||| ||| | Sbjct 67187110 CAGTTGCTTGCCAGCAAAGATTCAGTCTTTGCCGGTCAGGAGGAATTCCTTCTT-ATC-T 67187053 Query 104469 GAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 | ||||| || ||||||||||||| ||||| ||| || ||||| || || || |||| Sbjct 67187052 GGATCTTGGCCTTTACATTTTCTATTGTATC-TGAGGCTCGACCTCAAGAGTGATGGTCT 67186994 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTG 104556 | || || || || || || || ||||| Sbjct 67186993 T-CCCGTCAGGGTCTTCACGAAAATCTG 67186967 >seq9 Length=94583238 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 74660204 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 74660263 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 74660264 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 74660323 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 74660324 ATCAGCAGAGATGAAG 74660339 >seq3 Length=223996068 Score = 107 bits (118), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | || || || || ||||| || |||| ||| | | || Sbjct 58613955 CTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTT-GATCAAAGACATCCA 58613897 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| ||||| || ||||||| || || || || || |||||||| | ||||| ||| Sbjct 58613896 TCTTCCAGTTGCTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCTTA 58613837 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| ||||| || ||||||||||||| ||||| || | |||| || | || Sbjct 58613836 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAG--ATG 58613779 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||| ||||| |||||||| Sbjct 58613778 CTCTTCCCTGTCAGGGTTTTCACAAAAATCTGCAT 58613744 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548 || || |||||||| ||| |||||||||||||| ||| | || || ||| |||| ||| Sbjct 19114000 AAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAGGGGAAGACTAACTTC 19114059 Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592 || |||||| | ||| | | ||||||| |||||| || ||||| Sbjct 19114060 TTTGAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATGTC 19114103 >seq2 Length=248966461 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || | |||||||| | | | |||||||| ||||| || ||| ||| Sbjct 232007039 AAACTTCTCTTTGTCAAAATTAAACAAGACAACACCAACATTTCCTCTGTAATCTTCATC 232007098 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTAT 65890 | | |||||||| ||||||||||| |||| || || || ||||| | ||||| | Sbjct 232007099 TGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAATGAGGAGCCAC 232007158 Query 65891 TCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTC 65950 ||| ||||| | || ||||| | ||| | ||||| || | |||| || Sbjct 232007159 TCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAAGCACTTTCTC 232007218 Query 65951 CATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGC 66001 ||| ||| |||| || ||||| || |||||||| || || || || || || Sbjct 232007219 CATCGGTGGTACTGTGTAATCATAGGCGCTATACAGGTCGTAGCCCGCGGC 232007269 >seq8 Length=90615088 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 6785296 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 6785237 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || || |||||||| | ||| ||||| || ||| Sbjct 6785236 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTGTATCATCACTGTACCATGTTCACGTTG 6785177 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||| ||||| Sbjct 6785176 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 6785142 >seq27 Length=135185801 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || | |||||||| | | | |||||||| ||||| || ||| ||| Sbjct 37567103 AAACTTCTCTTTGTCAAAATTAAACAAGACAACACCAACATTTCCTCTGTAATCTTCATC 37567162 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTAT 65890 | | |||||||| ||||||||||| |||| || || || ||||| || ||||| | Sbjct 37567163 TGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGCCAC 37567222 Query 65891 TCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTC 65950 ||| ||||| | || ||||| | ||| | ||||| || | |||| || Sbjct 37567223 TCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAAGCACTTTCTC 37567282 Query 65951 CATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGC 66001 ||| ||| ||| || ||||| || || || || || || || || || || Sbjct 37567283 CATCGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 37567333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151317763971928