Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 185 1e-42 seq1 123 4e-24 seq5 116 6e-22 >seq20 Length=51049468 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| |||||| || |||||||| || || |||||||| ||||| Sbjct 29825069 GCTAAGCGCCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCCGCTATT 29825128 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||||||||| || ||||| ||||||| | |||| || |||| | Sbjct 29825129 CGTCGTCTGGCTCGTCGTGGTGGCGTGAAGCGGATCTCTGGTCTCATCTACGAGGAGACT 29825188 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | ||||| | | || || | || || || ||| |||||| Sbjct 29825189 CGTGGGGTGCTAAAGGTGTTCCTGGAAAATGTGATTCGGGACGCGGTCACCTACACCGAG 29825248 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || || ||||||||| |||||||| | |||||||| |||||||||| || Sbjct 29825249 CATGCCAAGCGCAAAACTGTCACCGCCATGGATGTGGTCTATGCGCTGAAACGTCAGGGA 29825308 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || || || ||||| Sbjct 29825309 CGTACCCTTTACGGCTTCGGCGGTTAA 29825335 Score = 183 bits (202), Expect = 5e-42 Identities = 203/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| |||| |||||| ||||||||||| || ||||||||||| || || Sbjct 30516866 CGCTAAACGTCACCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 30516925 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| ||||| |||||| | ||||| | ||||||| |||| Sbjct 30516926 CCGTCGTCTGGCCCGGCGTGGAGGAGTTAAGCGTATATCTGGTCTCATCTATGAGGAGAC 30516985 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| | | || |||| || || || ||| ||||| Sbjct 30516986 CCGCGGGGTGTTGAAGGTGTTCCTGGAAAATGTGATCCGCGACGCCGTCACCTACACCGA 30517045 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || || |||||||| |||||||| | ||||| || ||||||| || || Sbjct 30517046 GCATGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTCTACGCGCTGAAACGCCAGGG 30517105 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || ||||| ||||| || Sbjct 30517106 CCGCACCCTCTACGGCTTTGGCGGTTAAGCT 30517136 Score = 181 bits (200), Expect = 2e-41 Identities = 199/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||||| | | |||| || || || ||||| || || || |||||||||| Sbjct 30662513 CGCTAAGCGCCATCGGAAAG-TCTTGCGGGACAATATCCAGGGTATTACTAAGCCAGCTA 30662455 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||||||||||||||| || ||||| ||| |||| || | |||||||||||| Sbjct 30662454 TCCGACGTCTGGCTCGTCGTGGAGGCGTCAAACGTATCTCCGGTCTTATCTATGAAGAGA 30662395 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| || |||| | || || | | ||| |||| || || || ||| || | Sbjct 30662394 CTCGTGGGGTGCTGAAAGTGTTTCTGGAAAACGTGATCCGGGACGCGGTCACCTACACAG 30662335 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||| ||||||| | ||||| || | |||||||| | Sbjct 30662334 AGCACGCCAAGCGCAAGACTGTTACCGCCATGGACGTGGTCTACGCGCTCAAACGTCAGG 30662275 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| |||| |||||||| Sbjct 30662274 GCCGTACCCTTTACGGTTTTGG 30662253 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | |||||| ||||||||||| || || |||||||| || || Sbjct 29863631 CGCCAAGCGCCACCGCAAAGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCTGCCAT 29863572 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||||||||||||| || ||||| |||| || | ||||||| |||| Sbjct 29863571 TCGGCGCCTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGGCTCATCTATGAGGAGAC 29863512 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || || || ||||| Sbjct 29863511 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACTTACACCGA 29863452 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | ||||| || | || ||||| || Sbjct 29863451 GCACGCCAAGCGCAAGACTGTCACAGCCATGGACGTGGTCTACGCGCTCAAGCGTCAGGG 29863392 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 29863391 CCGCACTCTCTACGGTTTCGG 29863371 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| || || || ||||| || ||||||||||| || || Sbjct 30719109 CGCTAAGCGCCACCGCAAGGTTCTGCGCGACAATATCCAGGGTATCACCAAGCCCGCCAT 30719168 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||||||||||||| || ||||| |||| || | |||| || |||| Sbjct 30719169 CCGTCGCCTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 30719228 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | || || | | || |||| || || || ||| ||||| Sbjct 30719229 CCGTGGGGTGCTGAAGGTATTTCTGGAAAATGTAATCCGGGACGCGGTCACCTACACCGA 30719288 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||||||| ||||||| | ||||| || | ||||| || || Sbjct 30719289 GCACGCCAAACGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAACGCCAGGG 30719348 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | |||||||| || Sbjct 30719349 CCGCACCCTCTATGGTTTCGG 30719369 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | |||||||||||||||||| || || || ||||| || || Sbjct 29853560 CGCCAAGCGCCACCGCAAAGTTCTTCGAGATAACATCCAGGGTATTACAAAGCCTGCCAT 29853619 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||||||||||||| || ||||| |||| || | ||||||| |||| Sbjct 29853620 TCGGCGCCTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGGCTCATCTATGAGGAGAC 29853679 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || || || ||||| Sbjct 29853680 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACTTACACCGA 29853739 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | ||||| || | || || || || Sbjct 29853740 GCACGCCAAGCGCAAGACTGTCACAGCCATGGACGTGGTCTACGCGCTCAAGCGACAGGG 29853799 Query 16672 CCG 16674 ||| Sbjct 29853800 CCG 29853802 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | | || || ||||| || || ||||| ||||| || || Sbjct 30539970 CGCTAAGCGTCACCGCAAAGTTTTGCGCGACAACATTCAGGGCATCACAAAGCCGGCCAT 30540029 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || ||||| ||||| |||||| |||| || | |||| || |||| Sbjct 30540030 TCGCCGTCTGGCCCGGCGTGGAGGAGTTAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 30540089 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | || || ||| || |||| || ||| || ||| ||||| Sbjct 30540090 CCGTGGAGTGCTGAAGGTGTTTCTGGAGAATGTGATCCGGGACGCTGTCACCTACACCGA 30540149 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | || || || | || ||||| || Sbjct 30540150 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTTTACGCTCTCAAGCGTCAGGG 30540209 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| ||||| ||||| Sbjct 30540210 CCGCACTCTCTATGGATTTGGTGGTTAA 30540237 Score = 161 bits (178), Expect = 2e-35 Identities = 199/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| ||| || ||||| ||||| || |||||||| || ||||| Sbjct 30723943 CGCTAAGCGCCATCGCAAGGTTCTGCGCGATAATATCCAGGGCATCACCAAACCTGCTAT 30723884 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||||||||| || || ||||| |||| || | |||||||||||| Sbjct 30723883 CCGCCGCCTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGGCTCATCTATGAAGAGAC 30723824 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| | || || ||| ||| |||| || || || ||| ||||| Sbjct 30723823 CCGCGGGGTCCTGAAAGTGTTTCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 30723764 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||| |||||| | ||||| | ||||| || | || || || || Sbjct 30723763 GCATGCCAAGCGGAAGACAGTCACCGCTATGGACGTGGTCTACGCTCTCAAGCGCCAGGG 30723704 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||||| | || || ||||| ||||| ||| Sbjct 30723703 CCGTACCCTCTACGGCTTTGGTGGTTAAGCTT 30723672 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| | ||| || || |||||||| || || ||||| || ||||| Sbjct 30545658 CGCGAAACGCCATCGCAAAGTTCTGCGGGACAACATCCAGGGTATTACCAAACCTGCTAT 30545599 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||||||||||| || ||||| ||||||| | |||| || |||| Sbjct 30545598 TCGGCGCTTGGCTCGTCGTGGTGGCGTGAAGCGCATCTCTGGGCTCATCTACGAGGAGAC 30545539 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 30545538 CCGCGGTGTCCTAAAGGTGTTCCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 30545479 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | ||||| || | || ||||| || Sbjct 30545478 GCACGCCAAGCGCAAGACTGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGTCAGGG 30545419 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | |||||||| || Sbjct 30545418 CCGCACCCTCTATGGTTTCGG 30545398 Score = 158 bits (174), Expect = 2e-34 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| || Sbjct 30590000 GCTAAGCGCCATCGTAAAGTTCTGCGAGATAATATCCAGGGTATCACTAAGCCAGCCATT 30590059 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| ||||||||||| || || || | ||||| | ||||||| |||| | Sbjct 30590060 CGTCGCCTGGCCCGTCGTGGTGGTGTTAAACGGATTTCTGGGCTCATCTATGAGGAGACT 30590119 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | ||||| | | ||| |||| || || || ||| |||||| Sbjct 30590120 CGCGGGGTGCTAAAGGTGTTCCTGGAAAACGTGATCCGGGACGCGGTCACCTACACCGAG 30590179 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || ||||||||| |||||||| | ||||| || | || || || || Sbjct 30590180 CACGCCAAGCGCAAAACTGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGA 30590239 Query 16673 CG 16674 || Sbjct 30590240 CG 30590241 >seq1 Length=275406953 Score = 123 bits (136), Expect = 4e-24 Identities = 194/275 (71%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| |||||||||||||||| ||||| ||||| || | Sbjct 98731156 CGCCAAGCGCCACCGCAAAG-TCTTGAGAGATAACATCCAAGGCATCACTAAGCCGGCCA 98731214 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| ||||| ||||||||||| | || || | | || || |||| Sbjct 98731215 TTCGGCGCCTTGCTCGGCGTGGGGGAGTCAAGCGCATTTCCGGCCTCATTTACGAGGAGA 98731274 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || |||||| | || || ||| ||||| | || || || ||| || | Sbjct 98731275 CCCGAGGCGTGTTGAAGGTGTTTCTGGAGAATGTTATTCGGGACGCAGTCACCTACACGG 98731334 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 98731335 AGCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTAAAGCGGCAGG 98731394 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | || | | || || || ||| ||| | || || Sbjct 98731395 GACGCACCCTGTACGGCTTCGGAGGTTGAGCTGCT 98731429 >seq5 Length=107836144 Score = 116 bits (128), Expect = 6e-22 Identities = 189/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| | || |||||||| || ||||| |||| ||| Sbjct 64582701 CGCTAAGCGCCACCGCAAGGTTCTGTGCGACAACATCCAGGGCATCACTAAGC----TAT 64582646 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||||||||||||| || ||||| ||||||| | | || | |||| Sbjct 64582645 CCACCGCCTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCTGGGCTCATTTACAAGGAGAC 64582586 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || |||| | || || ||| || ||| || || || ||| ||||| Sbjct 64582585 CCACGGGGTCCTGAAAGTGTTTCTGGAGAACGCGATCTGGGACGCAGTCACCTACACCGA 64582526 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||||| |||| ||| |||| | ||||| || | || || || || Sbjct 64582525 GCATGCCAAGCGGAAGACTGGCACCGCCAGGGATGTGGTCTACGCTCTCAAGCGCCAGGG 64582466 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||||| | || ||||| || ||||| ||| Sbjct 64582465 CCGTATCCTCTACGGTTTCGGCGGTTAAGCTT 64582434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070202397938