Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq9 93.3 4e-14 seq8 87.8 2e-12 >seq3 Length=223996068 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || |||||||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 204970177 TCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATGTCTGACTG 204970236 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||| ||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 204970237 AATGTCCAATTTTCTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 204970296 Query 130776 CCCTTTGGGCA 130786 || | |||||| Sbjct 204970297 CCTTCTGGGCA 204970307 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || ||| |||||| | | ||||| ||| ||| | |||||| |||| | Sbjct 204594064 AGCTCCTCCTCCATTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 204594005 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| || || ||||||||||| ||||| || ||| |||||||||||| Sbjct 204594004 CTGAATGTCCAATTCTTCGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 204593945 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| | |||||| || ||||| Sbjct 204593944 CATCCTTCTGGGCAGGTGACATA 204593922 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || ||| |||||| | | ||||| ||| ||| | |||||| |||| | Sbjct 204655025 AGCTCCTCCTCCATTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 204654966 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| || || ||||||||||| ||||| || ||| |||||||||||| Sbjct 204654965 CTGAATGTCCAATTCTTCGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 204654906 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| | |||||| || ||||| Sbjct 204654905 CATCCTTCTGGGCAGGTGACATA 204654883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | ||||||||| Sbjct 204545361 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAA 204545302 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| ||| | Sbjct 204545301 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTAAG 204545242 Query 130785 CAAGTAACAT 130794 || | |||| Sbjct 204545241 CAGGGGACAT 204545232 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 19114105 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 19114046 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| |||||||| |||||||||||||| Sbjct 19114045 CCTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTC 19114006 >seq9 Length=94583238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| || ||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 74670824 TTTAAAAATCTGCGTCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 74670765 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 74670764 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 74670705 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 74670704 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 74670674 >seq8 Length=90615088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| || ||||| | ||| ||||||||| ||| || ||||| | | Sbjct 42675207 TTTAAAAATCTGCGTCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCACAAC 42675266 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 42675267 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 42675326 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 42675327 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 42675357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531864457877840