Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq17 102 8e-17 >seq17 Length=72251135 Score = 102 bits (112), Expect = 8e-17 Identities = 170/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 26753 TTTTTAGTCAAACAAA--ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACC 26810 ||||| || |||| | ||||| | |||||||| || | ||||| ||| | |||||| Sbjct 50453623 TTTTTGTTCCAACAGACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACC 50453682 Query 26811 ATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAA 26870 | || | || | | |||||||||||| | ||||| ||||| |||||||| Sbjct 50453683 CTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAG 50453742 Query 26871 GGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 26930 || || || || || || || || || || | | ||| ||||| || ||||||| | Sbjct 50453743 GGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGC 50453802 Query 26931 AACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGA 26990 | | | ||||| ||||| || ||||| || ||| | || |||||||| | |||||| Sbjct 50453803 ACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTTAGA 50453862 Query 26991 GGAGG 26995 || || Sbjct 50453863 GGTGG 50453867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 26753 TTTTTAGTCAAACAAA--ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACC 26810 ||||| || |||| | ||||| | |||||||| || | ||||| ||| | |||||| Sbjct 50452284 TTTTTGTTCCAACAGACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACC 50452343 Query 26811 ATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAA 26870 | || | || | | |||||||||||| | ||||| ||||| || |||||| Sbjct 50452344 CTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAA 50452403 Query 26871 GGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 26930 || || || || || || || || || || | | ||| ||||| || ||||||| | Sbjct 50452404 GGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGC 50452463 Query 26931 AACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGA 26990 | | | ||||| ||||| || || || || ||| | || |||||||| | || ||| Sbjct 50452464 ACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 50452523 Query 26991 GGAGG 26995 || || Sbjct 50452524 GGTGG 50452528 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || || | |||||| | || | || | | Sbjct 50452530 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 50452589 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| |||||||| || || || || || || Sbjct 50452590 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 50452649 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| ||||| || ||||||| | | | | ||||| ||| Sbjct 50452650 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 50452709 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| | || |||||||| | || ||||| || Sbjct 50452710 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 50452756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478629695391520