Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq17 109 4e-19 >seq17 Length=72251135 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 50453868 CCCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 50453809 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 50453808 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 50453749 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 50453748 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 50453691 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || || || || ||||| ||||||||| Sbjct 50453690 ACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 50453640 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 50452529 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 50452470 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 50452469 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 50452410 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| ||||| || || | | ||| || | | | ||||| | ||||||| Sbjct 50452409 GATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 50452350 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || || || || ||||| ||||||||| Sbjct 50452349 CTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 50452301 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 50452757 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 50452698 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 50452697 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 50452638 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 50452637 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 50452580 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || ||||| |||||||| Sbjct 50452579 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 50452530 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 50454324 CCCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 50454265 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| || Sbjct 50454264 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 50454205 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 50454204 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 50454147 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 50454146 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50454097 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 50454096 CCCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 50454037 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 50454036 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 50453977 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || || || ||| || | | | ||||| | ||||||| Sbjct 50453976 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 50453919 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || || || || |||||||| Sbjct 50453918 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50453869 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| | || Sbjct 50454537 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 50454478 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || |||| ||| ||||| || | |||||||||||| Sbjct 50454477 TTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 50454418 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | ||||||| |||| ||||||| Sbjct 50454417 TTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 50454360 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||| || || || || |||||||| Sbjct 50454359 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50454325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405061014303340