Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq3 123 3e-23 seq9 102 1e-16 >seq15 Length=80783214 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 49181657 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 49181716 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 49181717 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 49181776 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 49181777 CTGTTTCTTATACCATA 49181793 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 49205812 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAAACGGCAATCCTTGCTGCCAGGA 49205871 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 49205872 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 49205931 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 49205932 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 49205977 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 49186639 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 49186698 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 49186699 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 49186758 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 49186759 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 49186818 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 49186819 GTTTATTCGA 49186828 >seq3 Length=223996068 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 19112517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 19112458 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 19112457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 19112398 Query 32803 C 32803 | Sbjct 19112397 C 19112397 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 19110830 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 19110771 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | ||||||||||||||| |||||| Sbjct 19110770 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 19110725 >seq9 Length=94583238 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 74660337 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 74660278 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 74660277 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 74660219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633588707093600