Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 8e-14 seq3 87.8 3e-12 seq9 84.2 4e-11 >seq15 Length=80783214 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| |||||||||| | |||||| || Sbjct 49193056 CTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCACGCTGCTCTTC 49193115 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | || ||||||||| | | || | || ||||||| ||| | ||||| || |||| Sbjct 49193116 CTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGTTCCAG 49193175 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| | ||| | || || ||||||| Sbjct 49193176 GTAAATAGCAAATGCCCCAGGCCGCT 49193201 >seq3 Length=223996068 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || ||||||||||| || || | || || || || |||| Sbjct 19112392 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 19112451 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | ||| | |||||| || ||||| || || || ||||| || ||||| Sbjct 19112452 GGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 19112510 Query 42825 GACGAGG 42831 ||||||| Sbjct 19112511 GACGAGG 19112517 >seq9 Length=94583238 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 74660204 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 74660263 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | ||| || ||||| |||||||| || || || || || Sbjct 74660264 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCTGGACTCACTTTTTCCAATGAGCT 74660322 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 74660323 CATCAGCAGAGATGA 74660337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944274678024160