Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 149 6e-31 seq17 131 2e-25 seq22 127 2e-24 seq14 127 2e-24 seq4 114 1e-20 seq1 114 1e-20 seq13 84.2 2e-11 >seq11 Length=62170480 Score = 149 bits (164), Expect = 6e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | ||||| | ||||| |||||||||||| Sbjct 32766191 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 32766250 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 32766251 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 32766310 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| ||| Sbjct 32766311 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 32766370 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 32766371 TTCACGAAGATTTGCATTTT 32766390 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| ||||| |||||||||||||| | | ||||| | || Sbjct 32765719 AAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 32765778 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | ||||||| ||||||||| || ||||| ||||| || || Sbjct 32765779 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 32765838 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || ||||| || | || | ||| Sbjct 32765839 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 32765898 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || || || || ||||| Sbjct 32765899 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 32765931 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | ||||| | ||||| |||||||||||| Sbjct 32765963 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 32766022 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 32766023 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 32766082 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 32766083 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 32766142 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 32766143 TTCACGAAGATCTGCAT 32766159 >seq17 Length=72251135 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| |||||||| ||| Sbjct 50454065 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 50454006 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 50454005 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50453946 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 50453945 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50453886 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 50453885 TTCACGAAGATCTGCAT 50453869 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| |||||||| ||| Sbjct 50454521 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 50454462 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 50454461 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50454402 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 50454401 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50454342 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 50454341 TTCACGAAGATCTGCAT 50454325 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 50452726 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 50452667 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 50452666 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50452607 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 50452606 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50452547 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 50452546 TTCACAAAGATCTGCAT 50452530 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 50454293 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 50454234 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 50454233 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50454174 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||||||||| || Sbjct 50454173 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50454114 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 50454113 TTCACGAAGATCTGCAT 50454097 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 50452498 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 50452439 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || ||||||||||||||||| || ||| Sbjct 50452438 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 50452379 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | ||| || || || | || Sbjct 50452378 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTC 50452319 Query 64427 TTTACGAAAATTTGCATT 64444 ||||| || || |||||| Sbjct 50452318 TTTACAAAGATCTGCATT 50452301 >seq22 Length=50780147 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 41548508 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 41548449 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || |||||||| || | || || | |||||||| |||||| Sbjct 41548448 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 41548389 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||||||| || | |||||| || || || Sbjct 41548388 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCGACC 41548329 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 41548328 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 41548279 >seq14 Length=62568341 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 36062751 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 36062810 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || |||||||| || | || || | |||||||| |||||| Sbjct 36062811 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 36062870 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||||||| || | |||||| || || || Sbjct 36062871 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 36062930 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 36062931 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 36062980 >seq4 Length=119216639 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||||||| ||| || || || |||||||||||||| || | Sbjct 9844515 ACCACCACGAAGTCTCAACACTAGACGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 9844456 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| || |||||||| ||| | || || | |||||||| ||||| Sbjct 9844455 CAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 9844396 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || |||||| | | || Sbjct 9844395 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGAGCTTGAC 9844336 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || ||| |||| ||||| || Sbjct 9844335 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGGAAATCTGCATCTT 9844285 >seq1 Length=275406953 Score = 114 bits (126), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||| ||||| || || || |||||||||||||| || | | || || | Sbjct 99428835 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 99428894 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 99428895 ATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 99428954 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || | ||||| | || | |||||| || || || | | ||| | Sbjct 99428955 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCAACCTTGAGAGTGAT 99429014 Query 64408 GGTCTTGCCGGTCAA-AGTTTTTACGAAAATTTGCATTTT 64446 |||||| || ||||| ||| || || ||||| ||||| || Sbjct 99429015 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 99429054 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/226 (71%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 67187187 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 67187128 Query 64277 ACGGTGCG-CGCGTCTTCAAGCTGCTTGCCGGCATA-AATGAGCCGCTGCTGGTCGGGAG 64334 | || || | ||||| || |||||||| ||| | | | || | ||| |||| |||| Sbjct 67187127 A-AGTACGTTCCATCTTCCAGTTGCTTGCCAGCAAAGATTCAGTCTTTGCCGGTCAGGAG 67187069 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| | || || || ||||||| || | |||||| ||| || | Sbjct 67187068 GAATTCCTTCTTAT--CTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGC-TCGA 67187012 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTG 64440 | || | ||| | |||||| || |||| || || |||||||| || Sbjct 67187011 CCTCAAGAGTGATGGTCTT-CCCGTCAGGGTCTTCACGAAAATCTG 67186967 >seq13 Length=82951069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||| | || || | || || ||||| || || ||||| |||| Sbjct 49683470 CCGCCTCGCAGACGAAGCGCCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 49683529 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||| |||| || | || || ||||||||||| || || Sbjct 49683530 AGAGTGCGGCCATCCTCCAGCTCTTTGCTGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 49683589 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || | ||||| | |||| ||||| ||| ||| | || |||| || || || Sbjct 49683590 ATGCCCTCCTCGTCTTGGA-TTTTGGCTTTGACACTCTCAATGGTGTCACTGGGCTCGAC 49683648 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||| || || || || || ||||| Sbjct 49683649 CTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 49683696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499610661769040