Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 1e-14 seq14 95.1 1e-14 seq11 95.1 1e-14 seq1 84.2 2e-11 >seq22 Length=50780147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 |||||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 41548511 GCTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 41548452 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||| | |||||| || ||||| || ||| Sbjct 41548451 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA 41548392 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| |||| Sbjct 41548391 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCG 41548332 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || ||||| || || || ||||||||||| Sbjct 41548331 ACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 41548282 >seq14 Length=62568341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 |||||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 36062748 GCTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 36062807 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||| | |||||| || ||||| || ||| Sbjct 36062808 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA 36062867 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| |||| Sbjct 36062868 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 36062927 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || ||||| || || || ||||||||||| Sbjct 36062928 ACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 36062977 >seq11 Length=62170480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| ||||| |||||||| | ||||| ||| || ||||| || || Sbjct 32765735 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 32765794 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || ||||| ||||| ||| ||| || ||| Sbjct 32765795 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 32765854 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 32765855 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 32765914 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 32765915 TTCACAAAGATCTGCAT 32765931 >seq1 Length=275406953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | || |||||| ||||| | || ||||| |||||||| ||||| || | Sbjct 99428824 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 99428883 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || || ||||| |||||| || ||||| || ||||| Sbjct 99428884 AAAGTACGTCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 99428943 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||| || | | | | ||| | || |||| ||| || Sbjct 99428944 ATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCAACC 99429003 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA-GAGTTTTTACAAAAATCTGCAT 127113 | || || | || || || |||| |||| || |||||||||||||| Sbjct 99429004 TTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 99429051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468311407840