Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq12 152 7e-32 seq3 113 7e-20 >seq12 Length=79028859 Score = 152 bits (168), Expect = 7e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 65761687 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 65761746 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | |||||| |||||||| |||||||| | ||| || Sbjct 65761747 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 65761806 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| || || | ||||| ||||| || | || || | | |||| Sbjct 65761807 CACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGG 65761866 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 65761867 GTAGATCATTTCAACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCATTAAT 65761923 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | ||||| ||| | || Sbjct 65762708 TCTCACCCCATGGTTCTTTCCCTTGGTGAAAGCTGGTCCTCGTTCAATATCTGTCTTGAA 65762767 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || |||||||| || |||||||||||||| Sbjct 65762768 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 65762827 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | | ||||| || || Sbjct 65762828 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAG 65762884 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 65763540 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 65763599 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||| || | | || || Sbjct 65763600 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 65763659 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 65763660 GGCGGACTCTCAATCA 65763675 >seq3 Length=223996068 Score = 113 bits (124), Expect = 7e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || || || || || || ||||| | ||||||||| Sbjct 13296602 GTGGCCGTCTTGACAAGGTTGAAGCCCACCTCACCACCAAATGTGCTCGCCTTCCAGTAC 13296661 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| ||| | | ||| || || | |||||| |||||||||| || Sbjct 13296662 TCTGGAGAACAGATGGGGTTTCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCT 13296721 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 13296722 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCACTTCTCAA-GAAGTAGCCCCGGGTA 13296780 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| |||| ||| ||||| || | ||||| || || || ||||||||||| Sbjct 13296781 GAATTCCAAAGCATCGATGTCTCCATACAGCTCCTCCAATTCAGCTGCCATCTCCTTCTC 13296840 Query 9172 ACCTACAAG 9180 |||| |||| Sbjct 13296841 ACCTGCAAG 13296849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723678551284400