Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22 123 1e-22 seq14 118 4e-21 seq1 107 8e-18 seq3 100 1e-15 seq4 96.9 1e-14 seq9 95.1 5e-14 seq8 95.1 5e-14 seq15 89.7 2e-12 >seq22 Length=50780147 Score = 123 bits (136), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || |||||||| || || | || Sbjct 41548282 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 41548341 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || || || || ||||||||||||||||||||||| || Sbjct 41548342 GATACAATTGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 41548401 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || || || ||||| ||||||||| | |||||| | || || || Sbjct 41548402 CAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 41548461 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 41548462 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 41548499 >seq14 Length=62568341 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || |||||||| || || | || Sbjct 36062977 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 36062918 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 36062917 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 36062858 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || || || ||||| ||||||||| | |||||| | || || || Sbjct 36062857 CAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 36062798 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 36062797 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 36062760 >seq1 Length=275406953 Score = 107 bits (118), Expect = 8e-18 Identities = 156/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACT-GACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 ||| | ||||| || || || || ||| || || || || ||||| | ||||| | || Sbjct 99429051 ATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTTGAGCCCTC 99428992 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || |||| | | | || || || ||||||||||||||||||||||| || Sbjct 99428991 GGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 99428932 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||| | ||||||||| | |||||| | || || || Sbjct 99428931 GCAAAGACTGATCTTTGCTGGCAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTACAA 99428872 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| ||||| || ||||| Sbjct 99428871 CATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGACT 99428833 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || ||||| | || || || |||||||| || | | || Sbjct 164362421 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTCAAGCCCTCG 164362362 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || | | | | || || || || |||||||||||||||| || ||| || Sbjct 164362361 GATACAATAGTAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCTTGACCAC 164362302 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 164362301 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 164362242 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || |||| | || || ||||| Sbjct 164362241 ATTCAAAAGGAGCCCACTCTTCCTCTTGTGTTGAGACT 164362204 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| || || ||||| || || || || |||||||| || || | || |||| Sbjct 67186970 ATTTTCGTGAAGACCCTGACGGG-AAGACCATCACTCTTGAGGTCGAGCC-TCAGATACA 67187027 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACG- 391174 || ||| | | || || || || |||||| |||||||||||||||| | ||| | Sbjct 67187028 ATAGAAAATGTAAAGGCCAAGATCCA-GATAAG-AAGGAATTCCTCCTGACCGGCAAAGA 67187085 Query 391175 TTTAATTTTCTCAGGGAAACAACTTGAAGATGGAA-GAACTTTGGCGGATTATAATATTG 391233 | ||| || | || || ||||| |||||||||| | || ||| | || || || ||| Sbjct 67187086 CTGAATCTTTGCTGGCAAGCAACTGGAAGATGGAACGTAC-TTGTCTGACTACAACATTC 67187144 Query 391234 ATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 | ||||| | || ||||| |||| || ||||| Sbjct 67187145 AAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 67187178 >seq3 Length=223996068 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 10661549 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 10661608 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 10661609 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 10661661 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 57234535 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 57234478 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 57234477 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 57234418 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 57234417 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 57234358 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 57234357 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 57234298 Query 96287 TAGGG 96291 || || Sbjct 57234297 TATGG 57234293 >seq4 Length=119216639 Score = 96.9 bits (106), Expect = 1e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||| ||| || || ||||| || || || || |||||||| || | || Sbjct 9844288 ATGCAGATTTCCGTGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCAAGCTCTCG 9844347 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| | ||| | | || || || || ||||||||||||||||||||||| || Sbjct 9844348 GATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 9844407 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||| ||| | |||||| | || || || Sbjct 9844408 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTTTGTCTGACTACAAC 9844467 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || |||| |||| || ||||| Sbjct 9844468 ATTCAAAAGGAGTCCACTCTTCGTCTAGTGTTGAGACT 9844505 >seq9 Length=94583238 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 26790702 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 26790759 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 26790760 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 26790819 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 26790820 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 26790879 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 26790880 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 26790939 Query 96287 TAGGG 96291 || || Sbjct 26790940 TATGG 26790944 >seq8 Length=90615088 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 60348850 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 60348793 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 60348792 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 60348733 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 60348732 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 60348673 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 60348672 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 60348613 Query 96287 TAGGG 96291 || || Sbjct 60348612 TATGG 60348608 >seq15 Length=80783214 Score = 89.7 bits (98), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || | || || || || ||||||||||| | || || || || || Sbjct 33163799 GTTACCAACGCTGTTGTCACAGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 33163740 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||||| | || || |||||||| || ||||| || || || Sbjct 33163739 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 33163680 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 33163679 GCTGCTATTGCCTATGG 33163663 Score = 84.2 bits (92), Expect = 9e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||| |||||||| ||||| ||||| || || || | ||| || || Sbjct 33162349 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 33162290 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 ||| |||||| || |||| |||||| |||||| | || | |||| ||||||| || Sbjct 33162289 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 33162230 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407 ||| ||||| ||||| ||| || || || | || | |||||| |||| || ||||| Sbjct 33162229 TGGCATTCTCAATGTTTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 33162172 Query 452408 ATTACTAATGATAA 452421 || ||||||||||| Sbjct 33162171 ATCACTAATGATAA 33162158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975580034266328