Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq20 192 4e-43 seq15 132 4e-25 seq6 107 1e-17 seq11 100 2e-15 seq26 86.0 5e-11 >seq20 Length=51049468 Score = 192 bits (212), Expect = 4e-43 Identities = 942/1479 (64%), Gaps = 24/1479 (2%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| || || || |||| ||| ||| ||||| || || ||||| || Sbjct 26577086 ATTGGTAATGGTGATCTTGTTGGCCTTGCCTGTGCTCTTATCCATAGCTGTTACATTGAG 26577027 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||||||||||||||| | ||||| || || ||||| || || || || || | ||||| Sbjct 26577026 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACTCCCCTGGGTGCAGG 26576967 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||||| || || || ||| ||||| || || || ||| | | || Sbjct 26576966 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 26576907 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||| | | ||||| || | | ||||| ||||| || || || || | ||| Sbjct 26576906 GCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAGGTGGTGAAAA-TCT 26576848 Query 517453 GGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | | | | | || || || | ||| | | || | ||||| | || |||| Sbjct 26576847 GTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATTAGTACAGTCATGACTCCCCCTG 26576788 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || || || | ||| || |||| || || | | | | | || | |||| Sbjct 26576787 CAGTCTCCAACCCTAAAGACAGGGGAGCCACGTCCAACAAAAGCAGGTCCTGTACCTTTT 26576728 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 || | | || | | ||| ||||| |||| ||||| ||||| ||||| || |||| Sbjct 26576727 CAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCAT 26576668 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 517690 | || || | | | || || | |||||| || | | || || | | | Sbjct 26576667 CGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA- 26576609 Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 |||||||| || |||| || ||||| ||||| ||||| ||||| | | | ||||||| Sbjct 26576608 ACCTTAGGGATTCGAGTAGAGCCTCCTACTAAGACAATGTCATGGATTTTAGCTTTATCC 26576549 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810 | || | |||| | | | || || || || || || | ||||||| ||||| | Sbjct 26576548 ATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGCA 26576489 Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 517868 || | ||||| || ||||| || || || | || || ||||| ||||| | | Sbjct 26576488 CACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCATAAA 26576431 Query 517869 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 || |||| ||| | | | || || || || || | | || || | ||| | Sbjct 26576430 GTGAGTCAATTTCCAAGTTTGCCTGGGTGCTGGATGACAGGGTCCTCTTGGCCCTTTCGC 26576371 Query 517929 ATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATAT 517984 | || || | | | | | || |||| | ||| |||| || | |||| | Sbjct 26576370 AGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATGT 26576315 Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| ||||| ||| | | ||||| | || |||||||| || || ||| Sbjct 26576314 TTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCCCCACCC 26576255 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 || | || | || | || || | || | |||| ||||| || | | || | Sbjct 26576254 AAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGACG 26576195 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTT 518162 | |||||| || || ||||||| |||||| || | |||| || || || || | | Sbjct 26576194 GACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGTTCTCCCTGGCCT 26576135 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| | | Sbjct 26576134 GCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTAGCA 26576077 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 |||| ||||| || || |||||||| || ||||| || | ||| || || || || | Sbjct 26576076 CATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAGT 26576017 Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342 | || || ||||| || || |||| || || | || | | |||| || || | Sbjct 26576016 AGGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTCT 26575957 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATT--C 518400 ||||| ||| | | | ||| || || |||| || || || | |||| || | Sbjct 26575956 CCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTCC 26575898 Query 518401 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 518460 |||| || || || | | || || || |||| || |||| || ||||| Sbjct 26575897 CCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGGAAAGGCCA 26575839 Query 518461 GTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 518520 ||||||||||||||| || | |||||||| | ||| || || | ||||| || Sbjct 26575838 AAGTTTCATATCTGATTGCACGACAGGATCATTAAACTTTCTGCCGATCAGACGTTTGGC 26575779 Query 518521 ATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 518580 |||||| | ||| || ||||| || || | || | ||||| ||||| || || || Sbjct 26575778 ATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAG 26575719 Query 518581 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 518640 | ||||| || || || | ||||| || || ||||| || || || || || || Sbjct 26575718 CCGCTCTGTATCAGTGAAGGCCACATAGCTGGGGGTAGTGCGGTTGCCCTGGTCGTTGGC 26575659 Query 518641 AATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 ||| || || || || || | || | || || ||||| Sbjct 26575658 AATGATCTCCACCTTGCCGTGCTGGAACACCCCCACACA 26575620 >seq15 Length=80783214 Score = 132 bits (146), Expect = 4e-25 Identities = 366/553 (66%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| ||||||||||| |||||||| || | | | ||| |||| || |||||||| Sbjct 33163007 GCACCGTATGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCCTTCCCATTGAAG 33163066 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | || |||| ||| | ||| || || || | ||| || ||||| || ||||| Sbjct 33163067 AAGTCCTGGAGGAGTT-TCTGAATCTTGGGGATGCGGGTTGAGCCACCAACCAAGACAAT 33163125 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| || || |||||||| | |||| | |||| || || || || || Sbjct 33163126 ATCATGAATCTGAGACTTGTCCAGTTTGGCATCCCGAAGGGCTTTCTCCACAGGGTCCAG 33163185 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | |||||||| | | | |||||| || || | |||| || | || Sbjct 33163186 GGTGCCACGGAACAAGTCAGCATTTAATTCTTCAAACCGGGCACGGGTAATAGAGGTATA 33163245 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 33163246 GAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAGAG 33163305 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 517964 | || |||||||| ||||| || || | || | || | || ||| | || | | Sbjct 33163306 AGTGCGCTTAGCACGCTCACAAGCAGTACGAAGCCGACGGACAGCCCTCTTGTTCTCACT 33163365 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 ||| ||| | || | ||| | |||||| ||| ||| | | ||| | || | || Sbjct 33163366 GAT----ATCCTTCTTGTGTTTACGCTTGAACTCTGCAATAAA--ATGGTTGACCATGCG 33163419 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| ||||| || ||||| | ||||| ||| | |||| | | || | || | Sbjct 33163420 GTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCTCCAGCTGTAGATTTGACCTCAAAGAT 33163479 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||||| |||| || | || | |||||| || |||||||| | |||||| || || Sbjct 33163480 TCCATCCTCAATAG--TGAGGACTGACATCAAAAGTGCCACCACCTAAATCAAAGATCAG 33163537 Query 518143 TACATTCATTTCT 518155 ||||| ||||| Sbjct 33163538 CACATTTCTTTCT 33163550 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 33163651 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 33163710 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 33163711 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAATAG 33163770 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || | ||| || Sbjct 33163771 GCAGGTACTGTGACAACAGC 33163790 >seq6 Length=116888256 Score = 107 bits (118), Expect = 1e-17 Identities = 517/816 (63%), Gaps = 42/816 (5%) Strand=Plus/Minus Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | ||||| || ||||| | |||| ||||||||||||||||| | || | Sbjct 86467308 TCATGACTCCACCAGCAGTTTCAATTTCAAGGGAAAGAGGAGTGACATCCAACAGCAGCG 86467249 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | ||||| |||||| | | ||| |||| ||| ||| | || | ||| |||||| Sbjct 86467248 AGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATTGCTACCTGGACAGCTGCACCA 86467190 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||| ||| ||| | || || | | ||| |||| ||| ||| |||| || | Sbjct 86467189 TATGCAAGAGCCTCACCGGGGTTGATGCTCCTATTCAGTTCTTTCCCACTGAAGAAGTCC 86467130 Query 517676 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||||| ||| | ||| || || | | ||| || || || || ||||| || Sbjct 86467129 TGGAGAAGTT-TCTGAATCTTGGGGATGCAGGTTGAGCCACCCACGAAGACAATATCGCA 86467071 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | ||| || || ||||| || | |||| | |||| || || || || || | Sbjct 86467070 GATCTGAGACTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCACAGGGTCCAGGGTGCC 86467011 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 | ||||| || | | | |||||| ||| ||| | | Sbjct 86467010 ACGGAACAAATCAGCATTCAATTCTTCAAATC-----------AGA----------AGTT 86466972 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 |||||||| | | ||||||| ||||| | | || || ||||| || | | Sbjct 86466971 GATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAGAGAGTGTG 86466912 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 517970 |||||| | ||| | || || | || | | | || || | || | |||| Sbjct 86466911 CTTAGCAAGCTCAGAAGCAGTACGGAGGCAACAGACAGCCCTCTTGTTCTCACTGAT--- 86466855 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 518028 ||| | || | ||| |||||||| ||| ||| | ||| | || | ||| || Sbjct 86466854 -ATCCTTCTTGTGTTTGCTCTTGAACTCTGCAATGAA--ATGGTTGACCCTGCCATTGTC 86466798 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||||||||| || ||| |||| ||| | ||| | | || | || | |||||| Sbjct 86466797 AAAATCTTCGCCAGACAA----GTATCTCCAGCTATAGATTTGACCTCAAAGATTCCATC 86466742 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| || || | | |||||| | |||||||| | |||||| || || ||||| Sbjct 86466741 CTCAATAGTGAAGATTGACACATCAAAA-TGCCACCACCTAAATCAAAGATCAGCACATT 86466683 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 | ||| | || || || | ||||| |||| |||||||||| |||||||| | Sbjct 86466682 TCTCTCTGCTCCAACCTTCTTGTCTAAGCCATAGGCAATAGCAGCAGCACTTGGTTCACT 86466623 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 || ||||| | |||| ||||||||||| ||| |||||||| || || | | || Sbjct 86466622 GATGATTCTAAGTACATGGAGACCAGCAATAGTTCTAGCATCTTTGGTAGCCTCACGCTG 86466563 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || |||||||| | ||||| || || | ||| || Sbjct 86466562 AGAGTCGTTAAAGCAGGCAGGTACTGTGACAACAGC 86466527 >seq11 Length=62170480 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 40172673 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 40172614 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||||||| | | ||||| | Sbjct 40172613 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTACGA 40172554 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 40172553 GAAGCTTCTCATAAA 40172539 >seq26 Length=44047080 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || |||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 25864309 TAGCTACCGTAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCCAAGTCATTCATT 25864368 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| ||||| || || ||||||||||| || || |||| Sbjct 25864369 ATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAGATTGGTAGAGCTGGCCGAGATG 25864428 Query 367118 GA 367119 || Sbjct 25864429 GA 25864430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780551159074996