Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 >seq3 Length=223996068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| ||||| ||| |||| | Sbjct 65935843 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCATTGCAAACATG 65935784 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || |||||| | ||| ||||||||||||||||||| || | | | ||| Sbjct 65935783 TCACGAACCGGAGCTGGGCCAACACCAACAAACATCTCCAGGAACTCAG-ACCCATTCAT 65935725 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || ||| || | || ||||||||| ||||| || || Sbjct 65935724 GGTGATGAAGGGCACACGAGCCTCCCCCACAGTTGCCTTGGCGAGAAGCGTCTTGCCAGT 65935665 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 || || ||| | ||| || || |||| |||||| ||||| ||| Sbjct 65935664 ACTGGGAGAACCTGTGAGCAGCGCTCCCCTTGGAATTTTGGCCCCA 65935619 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 116969 CATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATC 117026 ||||| ||| ||| || ||| || || |||| ||||||||||||||| |||||||| || Sbjct 19114101 CATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTC 19114042 Query 117027 AAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 || ||| || |||||||||||||||||||| Sbjct 19114041 CAGTGAAATATTCTCCATAAAGTCAAATGGATT 19114009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589940489561840