Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq17 131 1e-25 seq11 107 1e-18 seq13 96.9 2e-15 seq1 86.0 4e-12 >seq17 Length=72251135 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 50454551 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 50454492 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || |||||||| || || | ||||||||| | || Sbjct 50454491 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50454432 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| |||||| | || | |||| || ||| || Sbjct 50454431 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 50454372 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 50454371 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50454325 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 50453849 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50453790 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 50453789 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 50453730 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| |||||||| Sbjct 50453729 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTA 50453670 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| |||||||||||||| Sbjct 50453669 CCAGTGAGGGTCTTTACAAAGATCTGCAT 50453641 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 50452738 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50452679 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 50452678 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 50452619 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 50452618 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 50452559 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||||||||||||||| Sbjct 50452558 CCGGTCAAGGTCTTCACAAAGATCTGCAT 50452530 Score = 118 bits (130), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 50452510 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50452451 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | || || || || Sbjct 50452450 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGT 50452391 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | ||| ||||||| Sbjct 50452390 ATCTTCACCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTT 50452333 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| ||||| |||||||||||||| Sbjct 50452332 TACCAGTGAGGGTCTTTACAAAGATCTGCAT 50452302 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 50454077 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50454018 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 50454017 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 50453958 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 50453957 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 50453898 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||| ||||||||||| Sbjct 50453897 CCGGTCAAGGTCTTCACGAAGATCTGCAT 50453869 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 50454305 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50454246 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 50454245 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 50454186 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 50454185 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 50454126 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||| ||||||||||| Sbjct 50454125 CCGGTCAAGGTCTTCACGAAGATCTGCAT 50454097 >seq11 Length=62170480 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 32765741 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 32765800 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 32765801 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 32765860 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||||||| Sbjct 32765861 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 32765920 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 32765921 AAGATCTGCATA 32765932 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| ||| | || || ||||| ||||| || || ||| Sbjct 32765933 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 32765992 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || |||||||| || || | |||||||| | || Sbjct 32765993 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 32766052 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || ||| | || | |||| || ||| || Sbjct 32766053 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 32766112 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 32766113 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 32766160 >seq13 Length=82951069 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| || || | || |||| ||||||| ||| | || || Sbjct 49683506 TCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTCTTTGCTGGAGAAG 49683565 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||| ||| || || |||||| Sbjct 49683566 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTC 49683625 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || ||| | || ||||||||| Sbjct 49683626 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACA 49683685 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 49683686 AAGATCTGCAT 49683696 >seq1 Length=275406953 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || || |||| ||| || || |||||||| ||||| || | | ||| || Sbjct 99428836 CTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 99428895 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| || || || ||||| || |||| ||||||||| | || | || ||||| Sbjct 99428896 TCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 99428955 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| | || | |||| | || || |||||| | || || ||| Sbjct 99428956 TCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCAACCTTGAGAGTGATG 99429015 Query 34947 GTTTTTCCCGTGA-GAGTCTTCACAAAGATCTGCATATT 34984 || || || || | ||||||||||||| |||||||| || Sbjct 99429016 GTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 99429054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324611973924048