Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20 158 1e-32 seq15 122 7e-22 seq22 105 5e-17 seq14 100 2e-15 seq1 98.7 8e-15 seq3 96.9 3e-14 seq4 91.5 1e-12 seq6 87.8 1e-11 >seq20 Length=51049468 Score = 158 bits (174), Expect = 1e-32 Identities = 373/554 (67%), Gaps = 16/554 (3%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||||| || || | || | || || Sbjct 26575587 GCCATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCACGGCAAG 26575646 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || || || ||| | ||||| || ||||| | ||||| Sbjct 26575647 GTGGAGATCATTGCCAACGACCAGGGCAACCGCACTACCCCCAGCTATGTGGCCTTCACT 26575706 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 || || || | | | || ||||| || || | || ||||| || ||||| Sbjct 26575707 GATACAGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCA-TG--AATCCCCAG 26575763 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || ||| | |||||||| |||||| | || || |||| ||||||||| | || || Sbjct 26575764 AACACTGTCTTTGATGCCAAACGTCTGATCGGCAGAAAGTTTAATGATCCTGTCGTGCAA 26575823 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTG 550286 |||||||||| | ||||||||||||| | | |||| || || || | || || Sbjct 26575824 TCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAATG 26575883 Query 550287 AAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | |||| | | ||| | ||| |||| || || |||| || |||||||| Sbjct 26575884 GTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTCTATGGT 26575939 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403 | | || ||||| | || || |||||| |||| | | | || || |||| | Sbjct 26575940 ACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCAATGCTG 26575998 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 26575999 TGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTG 26576058 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| | Sbjct 26576059 TTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCT 26576118 Query 550524 ATGGACTTGATAAA 550537 |||| | |||||| Sbjct 26576119 ATGGCTTAGATAAA 26576132 >seq15 Length=80783214 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || ||||| |||||||| || ||||| ||||| Sbjct 33163799 GTTACCAACGCTGTTGTCACAGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 33163740 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 33163739 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 33163680 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 33163679 GCTGCTATTGCCTATGG 33163663 Score = 100 bits (110), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || |||| || || ||| Sbjct 33164627 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 33164568 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || ||| Sbjct 33164567 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACT 33164508 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| || | |||||||| ||||| | |||| || || ||||| ||||| || Sbjct 33164507 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCCACCAACACGG 33164450 Query 550176 TTTTTG 550181 |||||| Sbjct 33164449 TTTTTG 33164444 >seq22 Length=50780147 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 41548490 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 41548433 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 41548432 CCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 41548373 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| ||||||||||| | | | || ||||| | || | Sbjct 41548372 GGATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCT 41548313 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || |||||||| ||||| Sbjct 41548312 TCCCCGTCAGGGTCTTCACGAAAATCTGCAT 41548282 >seq14 Length=62568341 Score = 100 bits (110), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 36062769 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 36062826 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 36062827 CCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 36062886 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | | || ||||| | || | Sbjct 36062887 GGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCT 36062946 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || |||||||| ||||| Sbjct 36062947 TCCCCGTCAGGGTCTTCACGAAAATCTGCAT 36062977 >seq1 Length=275406953 Score = 98.7 bits (108), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| | ||| | | |||||| | ||| || || ||||| || ||||| Sbjct 99428868 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCT 99428927 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||| ||||||||||||||||| ||||| || || || |||| | || ||||| Sbjct 99428928 TTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGT 99428987 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGT-AAGAGTTTTAACGAAAATTT 563470 ||| | | | | | |||||| | || || || || |||||| || || ||||| | Sbjct 99428988 ATCCGAGGGCTCAACCTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCT 99429047 Query 563471 GCAT 563474 |||| Sbjct 99429048 GCAT 99429051 >seq3 Length=223996068 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 10661549 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 10661608 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 10661609 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 10661661 >seq4 Length=119216639 Score = 91.5 bits (100), Expect = 1e-12 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| | ||| | | ||||| ||||| || || ||||| || ||||| Sbjct 9844470 AATGTTGTAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 9844411 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||| ||||||||||||||||| ||||| || || || ||||| || |||| Sbjct 9844410 TTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGT 9844351 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| | | | | || ||||| | || || || || || || || ||| |||| || Sbjct 9844350 ATCCGAGAGCTTGACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGGAAATCTG 9844291 Query 563472 CAT 563474 ||| Sbjct 9844290 CAT 9844288 >seq6 Length=116888256 Score = 87.8 bits (96), Expect = 1e-11 Identities = 123/169 (73%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || ||||| ||| |||||||||| || | | |||| || ||| ||||| |||| Sbjct 86466075 AAGGTGGAAATCATTTCCAATGATCAGGGGA-CTGAACCACCCCAAGCTATGTCACTTTT 86466133 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGT-AATCCTAC 550167 || | |||| || || ||||||| | |||||| | |||| || || | ||||| || Sbjct 86466134 ACTAATACTGGACGATTGATTGGTGAAGTAGCAAAGAACCAAGTCA-TGATGAATCCCAC 86466192 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 ||| | ||||||||||||||| | |||| | |||| ||| ||||| Sbjct 86466193 CAACATGGTTTTTGATGCTAAACAACTTATTGAATGAAGATTTGATGAT 86466241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029006933268340