Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq27 80.6 7e-11 >seq27 Length=135185801 Score = 80.6 bits (88), Expect = 7e-11 Identities = 184/273 (67%), Gaps = 12/273 (4%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || || | | Sbjct 37567245 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 37567186 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||| | || || || ||||||||||| || | Sbjct 37567185 TAGATGTAGGAGCTGGTGTCACAGATGAAGATTACAGAGGAAATGTTGGTGTTGTCTTGT 37567126 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| | | || ||| | | || ||||| | ||| ||| | |||| Sbjct 37567125 TTAATTTTGACAAAGAGAAGTTTGAAGTCAAAAACAGTGATCAAACTGCACAGCTCATTT 37567066 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| ||| ||||| || | | Sbjct 37567065 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAATTTTAGATGACACTG 37567012 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||||||||| | ||| ||||| || || |||| Sbjct 37567011 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAA 37566979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138672598350696