Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 100 5e-16 seq9 93.3 8e-14 >seq3 Length=223996068 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| |||||||| || |||||| |||||| | || |||| Sbjct 19112392 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 19112451 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 19112452 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 19112510 Query 26002 GACGAGG 26008 ||||||| Sbjct 19112511 GACGAGG 19112517 >seq9 Length=94583238 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 74660211 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 74660270 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| |||||| || || |||||||| |||||||||||| Sbjct 74660271 TCTGGCTAAAG-AAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 74660329 Query 25999 AGGGACGA 26006 || || || Sbjct 74660330 AGAGATGA 74660337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928781336679040