Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-16 seq15 104 2e-16 seq22 96.9 2e-14 seq14 91.5 1e-12 seq4 87.8 1e-11 seq3 87.8 1e-11 >seq21 Length=49987992 Score = 104 bits (114), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||||| | | || || ||||| ||| || || | ||| | || ||| Sbjct 14489171 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCATAGG 14489230 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || |||||||| ||| | || |||||||| |||||||| ||||||||||||||||| || Sbjct 14489231 CATACCTCCTGCCCCCTGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 14489290 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| ||||| |||||| ||||| ||||| Sbjct 14489291 TGGCATTCTCAATGTTTCTGCTGTGGATAA 14489320 >seq15 Length=80783214 Score = 104 bits (114), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||||| | | || || ||||| ||| || || | ||| | || ||| Sbjct 33162349 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 33162290 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || |||||||| ||| | || |||||||| |||||||| ||||||||||||||||| || Sbjct 33162289 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 33162230 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| ||||| |||||| ||||| ||||| Sbjct 33162229 TGGCATTCTCAATGTTTCTGCTGTGGATAA 33162200 Score = 98.7 bits (108), Expect = 6e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || || |||||| | ||| | || |||| || Sbjct 33164634 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAA 33164575 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||||||||||||||| || || || |||| || ||| ||||| | ||||| Sbjct 33164574 GGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTAC 33164515 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 ||| ||||||| | || || |||||||| || | |||| |||| ||||| Sbjct 33164514 TGATACTGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATGAATCC 33164461 Score = 86.0 bits (94), Expect = 4e-11 Identities = 222/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 || ||| | ||||||||||| ||||||||||| |||| ||||| || || | | | Sbjct 33163341 CGGCTTCGTACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGT 33163282 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 33163281 ATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGG 33163222 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | |||| | || | || | || || || || ||| || Sbjct 33163221 TTTGAAGAATTAAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTT 33163162 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||||| ||||| || || | ||||| ||||| | || || || ||||| Sbjct 33163161 CGGGATGCCAAACTGGACAAGTCTCAGATTCATGATATTGTCTTGGTTGGTGGCTCAACC 33163102 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785 | || || || || ||||| | | || | | || ||||| || | | ||| | Sbjct 33163101 CGCATCCCCAAGAT-TCAGAAACTCCTCCAGGACTTCTTCAATGGGAAGGAACTGAATAA 33163043 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || |||||||| ||||||||||| || || Sbjct 33163042 GAGCATCAACCCTGATGAGGCTGTTGCATACGGTGC 33163007 >seq22 Length=50780147 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| ||| |||| || || | ||| || |||||||||||||||||||| Sbjct 41548437 ATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 41548378 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| |||||| ||||| | | | ||||| || || Sbjct 41548377 ATCCTGGATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCGACCTCAAGAGTGAT 41548318 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| |||||||| || Sbjct 41548317 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 41548285 >seq14 Length=62568341 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| ||| |||| || || | ||| || |||||||||||||||||||| Sbjct 36062822 ATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 36062881 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| || ||||| | | | ||||| || || Sbjct 36062882 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGAT 36062941 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| |||||||| || Sbjct 36062942 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 36062974 >seq4 Length=119216639 Score = 87.8 bits (96), Expect = 1e-11 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| |||||||| || || | ||| || |||||||||||||||||||| Sbjct 9844442 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 9844383 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| || ||| ||| | ||||| || | ||| ||||| || | Sbjct 9844382 TCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGAGCTTGA--CCTCAAGAGTGA 9844325 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||| |||| || Sbjct 9844324 TGGTCTTCCCCGTCAGGGTCTTCACGGAAATCTG 9844291 >seq3 Length=223996068 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 10661549 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 10661608 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || | ||||| | | || || ||||| || Sbjct 10661609 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 10661661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267944736738968