Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 111 3e-19 seq4 95.1 2e-14 seq17 93.3 8e-14 seq3 86.0 1e-11 >seq1 Length=275406953 Score = 111 bits (122), Expect = 3e-19 Identities = 166/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||||||| | ||| | ||| ||| || || || || ||||| Sbjct 99428824 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 99428882 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 99428883 CAAAGTACGTCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 99428942 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||| ||| | ||| || | || || Sbjct 99428943 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCAAC 99429002 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || || || || || || | ||| |||||||| || Sbjct 99429003 CTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 99429054 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/203 (73%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||| Sbjct 67187187 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 67187129 Query 192369 TAATGTTCGTTC-ATCATCCAATTGTTTACCAGCAAAGATT-AATCTCTGTTGATCAGGT 192426 || || ||||| ||| |||| ||| || |||||||||||| | ||| || | ||||| Sbjct 67187128 CAA-GTACGTTCCATCTTCCAGTTGCTTGCCAGCAAAGATTCAGTCTTTGCCGGTCAGGA 67187070 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || |||||||| ||| | |||||| | || Sbjct 67187069 GGAATTCCTTC-TTATC-TGGATCTTGGCCTTTACATTTTCTATTGTATCTGA-GGCTCG 67187013 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| ||||| || || Sbjct 67187012 ACCTCAAGAGTGATGGTCTTCCC 67186990 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || | | |||| |||| ||| || |||||||||| Sbjct 164362233 CTTTTGA-ATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGA 164362291 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || ||| | | |||||||| ||||| || || || |||||||| Sbjct 164362292 TCAGTCTTTGGTGGTCAAGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTA 164362351 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | ||| || | | || || ||||| ||||| || | || | || || || | Sbjct 164362352 CTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGA 164362411 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 164362412 AAATCTGCATCTT 164362424 >seq4 Length=119216639 Score = 95.1 bits (104), Expect = 2e-14 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 192300 TTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATAT 192358 ||| ||| |||||| | ||| | || |||| | | | ||| | ||| ||| || || | Sbjct 9844524 TTTCATAGCACCACCACGAAGTCTCAACACTAGACGAAGAGTGGACTCCTTTTGA-ATGT 9844466 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || || ||| | || |||| ||| || ||||||||||| | ||| || | Sbjct 9844465 TGTAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCT 9844406 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | ||||| || |||||||| ||||| || || || |||||||| | | | ||| | Sbjct 9844405 GGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCG 9844346 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || || ||||| ||||| || || || | || || | | |||||||| | Sbjct 9844345 AGAGCTTGACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGGAAATCTGCATCT 9844286 Query 192539 T 192539 | Sbjct 9844285 T 9844285 >seq17 Length=72251135 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | ||| || ||| || || ||| Sbjct 50452531 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 50452472 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| | ||||| || || || Sbjct 50452471 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 50452412 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| |||||||| || || ||||| || | || | || Sbjct 50452411 GGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCC 50452352 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || |||||||||||||| | || || | ||| ||||||||| Sbjct 50452351 ACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 50452301 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| || | || | || | ||| | |||||| ||| || || ||| Sbjct 50453870 ATCCCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 50453811 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| | ||||| || || || Sbjct 50453810 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 50453751 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || || || || || | || | || Sbjct 50453750 GGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCC 50453691 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || |||||||||||||| | || || | ||| ||||||||| Sbjct 50453690 ACCTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 50453640 >seq3 Length=223996068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || |||| || || ||||||| || Sbjct 84875664 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATTGGGAGGAATTCCTTTTT 84875723 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || ||| |||| ||| | |||||| | || ||||| |||| | Sbjct 84875724 TATCTTGGATCTTGGCCTTTGCATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGA 84875783 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || | || | || || || || |||||||| || Sbjct 84875784 TGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTT 84875823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984411053789100