Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq20 192 4e-43 seq15 132 4e-25 seq6 113 3e-19 seq11 104 2e-16 >seq20 Length=51049468 Score = 192 bits (212), Expect = 4e-43 Identities = 942/1479 (64%), Gaps = 24/1479 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| || || || |||| ||| ||| ||||| || || ||||| || Sbjct 26577086 ATTGGTAATGGTGATCTTGTTGGCCTTGCCTGTGCTCTTATCCATAGCTGTTACATTGAG 26577027 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||||||||||||| | ||||| || || ||||| || || || || || | ||||| Sbjct 26577026 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACTCCCCTGGGTGCAGG 26576967 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || || || ||| ||||| || || || ||| | | || Sbjct 26576966 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 26576907 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||| | | ||||| || | | ||||| ||||| || || || || | ||| Sbjct 26576906 GCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAGGTGGTGAAAA-TCT 26576848 Query 281620 GGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | | | | || || || | ||| | | || | ||||| | || || | Sbjct 26576847 GTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATTAGTACAGTCATGACTCCCCCTG 26576788 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || || || | ||| || |||| || || | | | | | || | |||| Sbjct 26576787 CAGTCTCCAACCCTAAAGACAGGGGAGCCACGTCCAACAAAAGCAGGTCCTGTACCTTTT 26576728 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 || | | || | | ||| ||||| |||| ||||| ||||| ||||| || |||| Sbjct 26576727 CAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCAT 26576668 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 281857 | || || | | | || || | |||||| || | | || || | | | Sbjct 26576667 CGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA- 26576609 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 |||||||| || |||| || ||||| ||||| ||||| ||||| | | | ||||||| Sbjct 26576608 ACCTTAGGGATTCGAGTAGAGCCTCCTACTAAGACAATGTCATGGATTTTAGCTTTATCC 26576549 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | || | |||| | | | || || || || || || | ||||||| ||||| | Sbjct 26576548 ATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGCA 26576489 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 282035 || | ||||| || ||||| || || || | || || ||||| ||||| | | Sbjct 26576488 CACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCATAAA 26576431 Query 282036 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 || |||| ||| | | | || || || || || | | || || | ||| | Sbjct 26576430 GTGAGTCAATTTCCAAGTTTGCCTGGGTGCTGGATGACAGGGTCCTCTTGGCCCTTTCGC 26576371 Query 282096 ATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATAT 282151 | || || | | | | | || |||| | ||| |||| || | |||| | Sbjct 26576370 AGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATGT 26576315 Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| ||||| ||| | | ||||| | || |||||||| || || ||| Sbjct 26576314 TTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCCCCACCC 26576255 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 || | || | || | || || | || | |||| ||||| || | | || | Sbjct 26576254 AAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGACG 26576195 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTT 282329 | |||||| || || ||||||| |||||| || | |||| || || || || | | Sbjct 26576194 GACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGTTCTCCCTGGCCT 26576135 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| | | Sbjct 26576134 GCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTAGCA 26576077 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 |||| ||||| || || |||||||| || ||||| || | ||| || || || || | Sbjct 26576076 CATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAGT 26576017 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509 | || || ||||| || || |||| || || | || | | |||| || || | Sbjct 26576016 AGGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTCT 26575957 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT--C 282567 ||||| ||| | | | ||| || || |||| || ||| || | |||| || | Sbjct 26575956 CCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTCC 26575898 Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627 |||| || || || | | || || || |||| || |||| || ||||| Sbjct 26575897 CCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGGAAAGGCCA 26575839 Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 | ||||||||||||||| || | |||||||| | ||| || || | ||||| || Sbjct 26575838 AAGTTTCATATCTGATTGCACGACAGGATCATTAAACTTTCTGCCGATCAGACGTTTGGC 26575779 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 |||||| | ||| || ||||| | || | || | ||||| ||||| || || || Sbjct 26575778 ATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAG 26575719 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | ||||| || || || | ||||| || || ||||| || || || || || || Sbjct 26575718 CCGCTCTGTATCAGTGAAGGCCACATAGCTGGGGGTAGTGCGGTTGCCCTGGTCGTTGGC 26575659 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 ||| || || || || || | || | || || ||||| Sbjct 26575658 AATGATCTCCACCTTGCCGTGCTGGAACACCCCCACACA 26575620 >seq15 Length=80783214 Score = 132 bits (146), Expect = 4e-25 Identities = 366/553 (66%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| ||||||||||| |||||||| || | | | ||| |||| || |||||||| Sbjct 33163007 GCACCGTATGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCCTTCCCATTGAAG 33163066 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | || |||| ||| | ||| || || || | ||| || ||||| || ||||| Sbjct 33163067 AAGTCCTGGAGGAGTT-TCTGAATCTTGGGGATGCGGGTTGAGCCACCAACCAAGACAAT 33163125 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| || || |||||||| | |||| | |||| || || || || || Sbjct 33163126 ATCATGAATCTGAGACTTGTCCAGTTTGGCATCCCGAAGGGCTTTCTCCACAGGGTCCAG 33163185 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | |||||||| | | | |||||| || || | |||| || | || Sbjct 33163186 GGTGCCACGGAACAAGTCAGCATTTAATTCTTCAAACCGGGCACGGGTAATAGAGGTATA 33163245 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 33163246 GAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAGAG 33163305 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 282131 | || |||||||| ||||| || || | || | || | || ||| | || | | Sbjct 33163306 AGTGCGCTTAGCACGCTCACAAGCAGTACGAAGCCGACGGACAGCCCTCTTGTTCTCACT 33163365 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| ||| | || | ||| | |||||| ||| ||| | | ||| | || | || Sbjct 33163366 GAT----ATCCTTCTTGTGTTTACGCTTGAACTCTGCAATAAA--ATGGTTGACCATGCG 33163419 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| ||||| || ||||| | ||||| ||| | |||| | | || | || | Sbjct 33163420 GTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCTCCAGCTGTAGATTTGACCTCAAAGAT 33163479 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 |||||| |||| || | || | |||||| || |||||||| | |||||| || || Sbjct 33163480 TCCATCCTCAATAG--TGAGGACTGACATCAAAAGTGCCACCACCTAAATCAAAGATCAG 33163537 Query 282310 TACATTCATTTCT 282322 ||||| ||||| Sbjct 33163538 CACATTTCTTTCT 33163550 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 33163651 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 33163710 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 33163711 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAATAG 33163770 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||| || Sbjct 33163771 GCAGGTACTGTGACAACAGC 33163790 >seq6 Length=116888256 Score = 113 bits (124), Expect = 3e-19 Identities = 518/816 (63%), Gaps = 42/816 (5%) Strand=Plus/Minus Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | |||||||| ||||| | |||| ||||||||||||||||| | || | Sbjct 86467308 TCATGACTCCACCAGCAGTTTCAATTTCAAGGGAAAGAGGAGTGACATCCAACAGCAGCG 86467249 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | ||||| |||||| | | ||| |||| ||| ||| | || | ||| |||||| Sbjct 86467248 AGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATTGCTACCTGGACAGCTGCACCA 86467190 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||| ||| ||| | || || | | ||| |||| ||| ||| |||| || | Sbjct 86467189 TATGCAAGAGCCTCACCGGGGTTGATGCTCCTATTCAGTTCTTTCCCACTGAAGAAGTCC 86467130 Query 281843 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||||| ||| | ||| || || | | ||| || || || || ||||| || Sbjct 86467129 TGGAGAAGTT-TCTGAATCTTGGGGATGCAGGTTGAGCCACCCACGAAGACAATATCGCA 86467071 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || || ||||| || | |||| | |||| || || || || || | Sbjct 86467070 GATCTGAGACTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCACAGGGTCCAGGGTGCC 86467011 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 | ||||| || | | | |||||| ||| ||| | | Sbjct 86467010 ACGGAACAAATCAGCATTCAATTCTTCAAATC-----------AGA----------AGTT 86466972 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 |||||||| | | ||||||| ||||| | | || || ||||| || | | Sbjct 86466971 GATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAGAGAGTGTG 86466912 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137 |||||| | ||| | || || | || | | | || || | || | |||| Sbjct 86466911 CTTAGCAAGCTCAGAAGCAGTACGGAGGCAACAGACAGCCCTCTTGTTCTCACTGAT--- 86466855 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 282195 ||| | || | ||| |||||||| ||| ||| | ||| | || | ||| || Sbjct 86466854 -ATCCTTCTTGTGTTTGCTCTTGAACTCTGCAATGAA--ATGGTTGACCCTGCCATTGTC 86466798 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||||||||| || ||| |||| ||| | ||| | | || | || | |||||| Sbjct 86466797 AAAATCTTCGCCAGACAA----GTATCTCCAGCTATAGATTTGACCTCAAAGATTCCATC 86466742 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| || || | | |||||| | |||||||| | |||||| || || ||||| Sbjct 86466741 CTCAATAGTGAAGATTGACACATCAAAA-TGCCACCACCTAAATCAAAGATCAGCACATT 86466683 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 | ||| | || || || | ||||| |||| |||||||||| |||||||| | Sbjct 86466682 TCTCTCTGCTCCAACCTTCTTGTCTAAGCCATAGGCAATAGCAGCAGCACTTGGTTCACT 86466623 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 || ||||| | |||| ||||||||||| ||| |||||||| || || | | || Sbjct 86466622 GATGATTCTAAGTACATGGAGACCAGCAATAGTTCTAGCATCTTTGGTAGCCTCACGCTG 86466563 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || |||||||| | ||||| || || | ||| || Sbjct 86466562 AGAGTCGTTAAAGCAGGCAGGTACTGTGACAACAGC 86466527 >seq11 Length=62170480 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 40172673 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 40172614 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||||||| | | ||||| | Sbjct 40172613 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTACGA 40172554 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 40172553 GAAGCTTCTCATAAA 40172539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740362042499316