Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq1 179 3e-40 >seq1 Length=275406953 Score = 179 bits (198), Expect = 3e-40 Identities = 707/1101 (64%), Gaps = 51/1101 (5%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||||| ||| || ||| |||| | |||||| | || | Sbjct 229378138 ATGCCTTCTATGTTGCGGACCTGGGAGACATTCTGAAGAAACATCTGAGATGGTTGAAAG 229378079 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || |||| || || || | | || | || | | | Sbjct 229378078 CTCTTCCTCGGGTCACCCCCCTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 229378020 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||||||| ||| || || || || Sbjct 229378019 AAGACACTTGCTGCCATTGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAATTG 229377960 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | |||| ||||| | | ||| ||||| ||||| || Sbjct 229377959 GTGCAGAGTCTCGGGGTGCCCCCAGAGAGGATTATCTATGCAAATCCATGTAAACAAGTG 229377900 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | ||||| | ||||||||||||||||||||| Sbjct 229377899 TCTCAGATTAAGTATGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 229377840 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| Sbjct 229377839 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATCGCCACT 229377780 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || |||||||| ||||| || | | || ||||| Sbjct 229377779 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTCAAATTTGGTGCCACGCTCAAAACCAGC 229377720 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | ||| ||| ||| | ||| | || || | || |||||||||||| Sbjct 229377719 AGGCTGCTTTTGGAACGGGCGAAAGAGCTAGATATTGATGTCGTTGGTGTCAGCTTCCAC 229377660 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || |||||||| | ||| | || | | | ||||| |||| ||| | | Sbjct 229377659 GTAGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGCAGGCCATCTCTGATGCCCGCTGT 229377600 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || |||||| | || || ||||||| || | |||| |||||| | Sbjct 229377599 GTCTTTGACATGGG--CGCTGAGGTTGGTTTCAACATGTATCTGCTTGATAATGGTGGTG 229377542 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| || || | || || | Sbjct 229377541 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCA 229377485 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || |||| | | |||||||| || | ||| ||| || | ||| || | Sbjct 229377484 ACCCAGCACTGGACAAGTATTTTCCATCCGACTCTGGAGTGAGAATCATAGCTGAGCCAG 229377425 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 |||| ||||| | | | || || | || | || || | | | ||||| ||||| || Sbjct 229377424 GCAGATACTATGTTGCATCAGCTTTCACGCTCGCAGTTAATATTATTGCCAAAAAACTTG 229377365 Query 20977 TGTTGAAG--ACACTC-----CTGGAGATAAA------------------AAGTTTATGT 21011 | || ||| ||| | ||| ||| || | ||| |||| Sbjct 229377364 TATTAAAGGAACAGACAGGCTCTGATGATGAAGAGGAGTCTAGTGAACGGACGTTCATGT 229377305 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--ACCATGCTCG 21069 |||| || || ||||| || |||||| || |||||| ||| |||| |||| || | Sbjct 229377304 ATTACGTGAACGATGGAGTATATGGCTCCTTCAACTGC--ATTCTTTACGACCACGCGCA 229377247 Query 21070 TCCTATGCCTATGCTGCTTAAAGAA---AAACGCCTTGAAGACAAAGACTATGTTTCTAG 21126 | |||| | |||| || | | ||| | || || || | ||| || || Sbjct 229377246 CGTGAAGCCTCTTCTGCAGAAGGGACCCAAA---CCAGACGAGAAGTATTATTCATCCAG 229377190 Query 21127 CATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGA 21186 ||| ||||| || | ||| | ||| | || |||||||| |||| ||| | || || || Sbjct 229377189 CATCTGGGGACCGACCTGTGGCGGCCTGGACCGCATTGTTGAGCGCTGTAACCTACCTGA 229377130 Query 21187 GCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT- 21245 | | || |||||||| ||| | | ||||| |||||||| ||||||| || | ||| Sbjct 229377129 GATGCATGTGGGCGATTGGATGCTCTTTGAGAACATGGGTGCTTACA-CTGTTGCTGCTG 229377071 Query 21246 CTTCAACCTTTAACGGCTTCC 21266 |||| ||||| || || |||| Sbjct 229377070 CTTCTACCTTCAATGGATTCC 229377050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463513928246880