Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq17 131 2e-25 seq11 131 2e-25 seq13 107 2e-18 seq2 91.5 1e-13 seq23 84.2 2e-11 seq22 84.2 2e-11 >seq17 Length=72251135 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || |||||||| || Sbjct 50454065 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 50454006 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 50454005 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50453946 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 50453945 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50453886 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 50453885 TTCACGAAGATCTGCAT 50453869 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || |||||||| || Sbjct 50454521 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 50454462 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 50454461 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50454402 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 50454401 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50454342 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 50454341 TTCACGAAGATCTGCAT 50454325 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 50452726 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 50452667 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 50452666 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50452607 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 50452606 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 50452547 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 50452546 TTCACAAAGATCTGCAT 50452530 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 50453837 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 50453778 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || |||||||| || ||||| |||||| |||| Sbjct 50453777 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 50453718 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| |||||| || || || || Sbjct 50453717 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTC 50453658 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 50453657 TTTACAAAGATCTGCAT 50453641 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||| || || Sbjct 50452498 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 50452439 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || ||||||||||| || || ||||| |||| Sbjct 50452438 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 50452379 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| |||||| || || || || Sbjct 50452378 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGGTC 50452319 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 50452318 TTTACAAAGATCTGCAT 50452302 >seq11 Length=62170480 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 32765734 GGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 32765792 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 32765793 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 32765852 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 32765853 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 32765912 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 32765913 TCTTCACAAAGATCTGCAT 32765931 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 32765962 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 32766020 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 32766021 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 32766080 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 32766081 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 32766140 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 32766141 TCTTCACGAAGATCTGCAT 32766159 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 32766190 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 32766248 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 32766249 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 32766308 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 32766309 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 32766368 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 32766369 TTTTCACGAAGATTTGCAT 32766387 >seq13 Length=82951069 Score = 107 bits (118), Expect = 2e-18 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||||| || || ||| | | | ||||| |||| |||| Sbjct 49683499 GGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCA-TCCTCCAGCTCTTTGC 49683557 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | | | || || ||||||||||| || |||||||| |||| ||| ||| ||| || Sbjct 49683558 TGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGAT-TTTGGCT 49683616 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| ||||| ||||| ||||||| || || | ||| | ||| ||||| |||| Sbjct 49683617 TTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGG 49683676 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 49683677 GTCTTCACAAAGATCTGCAT 49683696 >seq2 Length=248966461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 11/207 (5%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTA-ATCGCCCATCGTGGACGAG--------TCCTCGAG 133513 ||||||||||||||| |||||| | || | ||| || ||| | ||| || Sbjct 209119541 GGTGGACTCTTTCTGGATATTGGATATTG--TATCCTGACGGAGTACAGCCATTCTCCAG 209119484 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||| ||| |||| || |||| ||||| || |||||||| |||||||| ||| Sbjct 209119483 CTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTCGGAT 209119424 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| | |||| ||||| ||||||| || || | ||| | ||||||||| Sbjct 209119423 TTTGGTTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTTTTGCC 209119364 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| | || || || |||||||| Sbjct 209119363 CATCAGGATCTTCACAAAGATCTGCAT 209119337 >seq23 Length=62282865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG----TCCTC 133510 ||||| | |||| |||||||||| || ||||| || || | | || || ||||| Sbjct 37399319 AAATGCAGGGTGAACTCTTTCTGGATTTTGTAGTCTGACA--GAGCAC-AGCCCATCCTC 37399375 Query 133511 GAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||||| | ||| || ||| || |||||||||| || ||||||||||||| || Sbjct 37399376 -AGCTGTTAGCCAGCAAAAACTAGATGCTGCTGGTCAGGCGGGATGCCTTCCTGATCATG 37399434 Query 133571 GATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 ||| || |||| | |||| ||||| |||||| || || ||||||| | || Sbjct 37399435 GATTTTGAATTTGACATTCTCAGTGGTGTCACTGGGCTTGACCTCAGGGGTGACGATCTT 37399494 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||| || || || |||||| |||| Sbjct 37399495 GCCCTTCAGGGTCTTCACAAAAATCAGCAT 37399524 >seq22 Length=50780147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || | | | || || || |||||||| Sbjct 41548478 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 41548420 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | | || || | |||||||| ||||| || |||||||| || |||||| ||| Sbjct 41548419 AACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 41548360 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | |||||| || || | |||| ||| || || ||||| || Sbjct 41548359 TACATTTTCAATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGGGT 41548300 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 41548299 CTTCACGAAAATCTGCAT 41548282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483387770273840