Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 279 6e-70 seq1 212 7e-50 seq7 86.0 7e-12 >seq2 Length=248966461 Score = 279 bits (308), Expect = 6e-70 Identities = 664/997 (67%), Gaps = 15/997 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 59819126 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 59819185 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | ||| || | Sbjct 59819186 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAATCACCAG 59819242 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| ||||||||||||||||| || |||| || | Sbjct 59819243 CTCCGAAAACGCACACAGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCACCCT 59819302 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 59819303 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 59819362 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | ||||| | || Sbjct 59819363 ACATGTCATACTTTTGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 59819422 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || |||||||| || || || || | ||||||||| |||| || Sbjct 59819423 TGGCCCAGAGATACTCATCTGGACTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 59819482 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | || || || || | Sbjct 59819483 TATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGC 59819542 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 59819543 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 59819602 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597 |||| | ||||| | | ||| ||||||| | ||||| ||| || || | Sbjct 59819603 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTA-TGG--GATGGCATTC 59819659 Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| |||| ||| ||| |||| | || || || || | Sbjct 59819660 TCTCCGTTTCTAGGTTGTTCTCACCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGT 59819719 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 59819720 TGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCA 59819779 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | | ||| || ||||| | ||||| || || ||||| || || ||||| ||||| |||| Sbjct 59819780 GCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACA 59819839 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CAT 162833 | |||||||||| | | |||||||||||||||| ||| || || | || || || Sbjct 59819840 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAG 59819899 Query 162834 C-ACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | | |||| || | || || | ||| ||||| ||||| | || || | ||||| Sbjct 59819900 CTGCAGCCAAAAAGGATTTC---TCTGATTTTCTATCCACGTGAATACAATAGAAATTCT 59819956 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 59819957 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 59820016 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 ||||||| ||||| || || || ||||| || ||| || | || ||| || |||| Sbjct 59820017 TAGAATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 59820076 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | | | | | || | ||||| || | |||||||| Sbjct 59820077 GCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTT 59820113 >seq1 Length=275406953 Score = 212 bits (234), Expect = 7e-50 Identities = 240/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 175310676 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 175310617 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| ||||| | || || || ||| Sbjct 175310616 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGA 175310557 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 175310556 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 175310497 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 175310496 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 175310437 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||||||||| | Sbjct 175310436 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 175310377 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 175310376 CTCTTACATCCTGGGTCACCAC 175310355 Score = 122 bits (134), Expect = 1e-22 Identities = 176/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 175313507 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 175313450 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| | |||||||| || || Sbjct 175313449 -TCCCCACCTGCCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCA 175313391 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | || ||||| || || || || || || | |||||||| | Sbjct 175313390 TTGGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 175313331 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 175313330 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 175313271 Query 171743 TCATAGTG 171750 | |||||| Sbjct 175313270 TTATAGTG 175313263 >seq7 Length=100009711 Score = 86.0 bits (94), Expect = 7e-12 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||| ||||| || ||||| ||| | | |||||| Sbjct 47637339 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCGCATGTATTCAGTAAGTATTTC 47637398 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | | ||| || | | || || | | ||||||||| |||||||| || | Sbjct 47637399 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCGGCCTGCACTCTGG 47637456 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || ||| ||||| || |||| | ||||||||| ||| || | Sbjct 47637457 ACCAGGAGGCATAAACCACGGGGACCAACTTACTGGCCATGAAGACATTGGGGAAGCAGG 47637516 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 47637517 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCACATCCACATGGAC 47637574 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | | || || | || ||||| Sbjct 47637575 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAGTTTTCAATCTT 47637634 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| || || || || |||||||| || Sbjct 47637635 CTCATGCACCACCATCGAGTATGCAATGGGGAAGTC 47637670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578392478633600