Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17 116 2e-21 seq11 82.4 5e-11 >seq17 Length=72251135 Score = 116 bits (128), Expect = 2e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 50452528 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 50452469 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 50452468 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50452409 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | ||| || | |||||| || | ||||| Sbjct 50452408 ATGCCTTCTTTTTCTTGTATCTTCACCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 50452350 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| |||||||| || | || ||||||||||||||||| || Sbjct 50452349 CTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATTGT 50452299 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 50453867 CCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 50453808 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 50453807 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50453748 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 50453747 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 50453689 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| |||||||| || | || ||||||||||||||||| || Sbjct 50453688 CTCCAGGGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATTGT 50453638 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 50452756 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 50452697 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 50452696 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50452637 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 50452636 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 50452578 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||||||||| Sbjct 50452577 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 50452530 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| |||||| || |||||||| || | Sbjct 50454553 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 50454494 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| || || |||||||| |||| | |||||| ||| | | Sbjct 50454493 ACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 50454434 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || || || | | | || | |||||| || | ||| Sbjct 50454433 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 50454375 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 50454374 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50454325 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 50454095 CCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 50454036 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||| ||| | || Sbjct 50454035 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50453976 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 50453975 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 50453917 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 50453916 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50453869 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 50454323 CCACCTCTAAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 50454264 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 50454263 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 50454204 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 50454203 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 50454145 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 50454144 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 50454097 >seq11 Length=62170480 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | |||| || || || |||||| || ||||||||||| || Sbjct 32765705 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 32765764 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 32765765 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 32765824 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| || | || | |||||| || | ||||| Sbjct 32765825 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 32765883 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 32765884 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 32765932 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || ||| || || ||||||||||| || Sbjct 32766160 ACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 32766219 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 32766220 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 32766279 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| |||| || | |||||| || | |||| Sbjct 32766280 AATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCACTGGGCTCCA 32766338 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| || ||||| ||||| Sbjct 32766339 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 32766387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328682102766720