Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 288 1e-72 seq23 156 5e-33 seq19 149 7e-31 seq12 145 9e-30 >seq1 Length=275406953 Score = 288 bits (318), Expect = 1e-72 Identities = 255/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 175310355 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 175310414 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 175310415 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 175310474 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 175310475 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 175310534 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||| Sbjct 175310535 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTG 175310594 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 175310595 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 175310654 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 175310655 ATAGCCTGCCTCACTCTCT 175310673 Score = 194 bits (214), Expect = 2e-44 Identities = 209/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || ||||| || |||||||| | ||| || ||||| || ||||| || Sbjct 175313242 GTACAGCCCACAGTATTTCTTCACTATAAATTATCTGAAGATCACCTAAATATCACTTGC 175313301 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | ||||| | || ||||||| ||||| Sbjct 175313302 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAAGTCTCTGGGTCAGGGATTGAG 175313361 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| | || | | || || | |||||||| || ||||| | ||| | ||||| Sbjct 175313362 AACAGTACCAAGATCGTCTCACACCCCAATGGAACAACATCTGTCATCAGCATCCTCCAG 175313421 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 175313422 ATCAAAGACCCCAAGAGGCAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 175313481 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||| ||||||||||| | ||| |||| Sbjct 175313482 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTA 175313518 >seq23 Length=62282865 Score = 156 bits (172), Expect = 5e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| || ||||| Sbjct 35821381 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAA 35821322 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||| |||||| || |||||||| | Sbjct 35821321 GGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATT 35821262 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| || || || | Sbjct 35821261 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGA 35821202 Query 147162 GGGG 147165 |||| Sbjct 35821201 GGGG 35821198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| || || ||||| Sbjct 35819008 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATCCCCTTCAGCTCTGTTG 35818949 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||||| ||| ||||| || |||||| Sbjct 35818948 GAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATCTTCACTCCT 35818889 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 35818888 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 35818856 >seq19 Length=60445663 Score = 149 bits (164), Expect = 7e-31 Identities = 216/304 (71%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| || ||||||| | ||||||| ||||| | | |||||| Sbjct 53068350 GTACTCCCTGGTGTTCATGATTGGGCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 53068291 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||||||||| || ||| Sbjct 53068290 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 53068231 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | |||| || || || |||||||||| | || |||| | Sbjct 53068230 TGTGCTCTTCCTAGTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAA----AGA 53068177 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||||||||||||||||| | ||| || | || ||| |||| Sbjct 53068176 GTGGGCTTTTGGCCACCACATGTGTAAGTTGCTCTCGGGGCTCTATTACATGGGCTTGTA 53068117 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||| ||||| | ||| ||||||| || | || |||| Sbjct 53068116 CAGCGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 53068057 Query 8910 GGTG 8913 ||| Sbjct 53068056 CGTG 53068053 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 53168906 GTACTCGGTGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 53168965 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 53168966 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 53169025 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 53169026 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 53169058 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 53067637 TGGACCTGGCCATGCTGGTGACCGAGGTGATCGCCTACACACACTGCTGTGTCAACCCCG 53067578 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | |||||||| || || || || | ||||| Sbjct 53067577 TGATCTACGCCTTCGTTGGTGAGAGGTTCC 53067548 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 53169622 TGGACCTGGCCATTCAAGTGACAGAGGTGATCGCCTACACTCACTGCTGCGTCAACCCTG 53169681 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||||| ||||| ||||| | ||||| Sbjct 53169682 TGATCTACGTCTTTGTCGGCGAGAGGTTCC 53169711 >seq12 Length=79028859 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 3823865 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 3823806 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || ||||| |||||||| || |||| Sbjct 3823805 TGCCACAGGCTGAGAACCA------------TGGGCCTGACATCAAGGAGCACGTGAACT 3823758 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 3823757 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 3823711 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 3821553 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3821494 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 3821493 TAGAATCCTACATGACAACGAAGATG 3821468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583448133182400