Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 seq17 113 4e-20 seq22 109 5e-19 seq14 109 5e-19 seq4 98.7 9e-16 seq1 96.9 3e-15 >seq11 Length=62170480 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 32766196 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32766255 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | | Sbjct 32766256 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 32766315 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| |||||||| Sbjct 32766316 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 32766375 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 32766376 GAAGATTTGCATTTTG 32766391 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 32765740 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32765799 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | Sbjct 32765800 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 32765859 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 32765860 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32765919 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 32765920 AAAGATCTGCAT 32765931 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 32765968 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32766027 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | Sbjct 32766028 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 32766087 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 32766088 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32766147 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 32766148 GAAGATCTGCAT 32766159 >seq17 Length=72251135 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 50454060 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 50454001 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||| ||||| |||||| ||| | | Sbjct 50454000 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 50453941 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 50453940 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCAC 50453881 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 50453880 GAAGATCTGCAT 50453869 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 50454516 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 50454457 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||| ||||| |||||| ||| | | Sbjct 50454456 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 50454397 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 50454396 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCAC 50454337 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 50454336 GAAGATCTGCAT 50454325 >seq22 Length=50780147 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | |||||||| | ||| | || |||||||||||||||||| || | Sbjct 41548509 TCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 41548450 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || ||||| ||||| || |||| |||| | |||||||| | ||| Sbjct 41548449 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGG 41548390 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||||| ||| |||||| ||| | | || | | || || | || || Sbjct 41548389 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCAATTGTATCCGAGGGCTCGAC 41548330 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||||| || ||||| || |||||||| Sbjct 41548329 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 41548282 >seq14 Length=62568341 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | |||||||| | ||| | || |||||||||||||||||| || | Sbjct 36062750 TCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 36062809 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || ||||| ||||| || |||| |||| | |||||||| | ||| Sbjct 36062810 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGG 36062869 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||||| ||| |||||| ||| | | || | | || || | || || Sbjct 36062870 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 36062929 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||||| || ||||| || |||||||| Sbjct 36062930 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 36062977 >seq4 Length=119216639 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | | | | || |||||||||||||||||| || | | Sbjct 9844514 CCACCACGAAGTCTCAACACTAGACGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 9844455 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 9844454 AAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 9844395 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA-TTCCAC 35688 | | ||||| ||| |||||| ||| | | || | || || | || | || Sbjct 9844394 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATC-CGAGAGCTTGAC 9844336 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||||| || ||||| | |||||||| Sbjct 9844335 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGGAAATCTGCAT 9844288 >seq1 Length=275406953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||| | |||||||| ||||| | || |||||||||||||||||| || | | Sbjct 99428824 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 99428883 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 99428884 AAAGTACGTCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 99428943 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| | | | | | | | || || | || ||| Sbjct 99428944 ATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCAACC 99429003 Query 35690 TCCACCGTGATCGTTTTACCCGTCAA-AGTTTTCACAAATATCTGCAT 35736 | | ||||| || || || ||||| ||| |||||||| |||||||| Sbjct 99429004 TTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 99429051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450762799527280