Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ovis_20aries_20[refseq_20GCF_5F000298735.2_202015-11-20] 5,466 sequences; 2,615,516,299 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26 150 1e-31 seq3 107 2e-18 seq11 95.1 1e-14 seq9 86.0 5e-12 seq8 86.0 5e-12 >seq26 Length=44047080 Score = 150 bits (166), Expect = 1e-31 Identities = 305/446 (68%), Gaps = 9/446 (2%) Strand=Plus/Plus Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300 |||| || |||| || || | ||| |||| || |||||| | ||||| | || || | Sbjct 7416578 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTATATCCCGAATGGCCAG 7416637 Query 77301 GGATGTGCAGCCAGACAACCTCCA-GCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCA 77359 | | ||| ||| || |||| ||||| || | ||||||| | |||||| Sbjct 7416638 GAACAGGCATCCACTGAATGTCCATGCTCCGCGCC-AGCCGCTCCAGCTCCGCAAAGTCC 7416696 Query 77360 TCCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTC 77416 ||||| || || || ||||| | ||| | ||||||||| |||||||||||| | Sbjct 7416697 TCCTTACTGGTCACCT---CCTCC-CGGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCC 7416752 Query 77417 TTAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTC 77476 || ||||| | || | ||||||||||| ||||||||||| ||||| | |||||||| Sbjct 7416753 TTCACCCAGGTGGTGATGCCATTGATGGTAAACATGCTGTCCGTGTAAAGAACCAGCTTA 7416812 Query 77477 TTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGC 77536 |||| | | ||| |||||| | | |||||| | || || || || || || | Sbjct 7416813 GTGATGTCCTGAGCCTTAGCTTGCTCGATGGCTTTGCAGGCTGCATGAATCTCCGCCCTT 7416872 Query 77537 TGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAA 77596 |||||||| |||||||| ||||| | | ||||| | || || ||||| Sbjct 7416873 TGGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCCAG 7416932 Query 77597 TATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTG 77656 || |||| || || || || || || | ||||| |||| |||||||||||| Sbjct 7416933 TACACGCTGATTCCTGCGCGAGCCCTCTTGCGCCCGTTATTGGAGCAGCAGCCGTCAGTG 7416992 Query 77657 TAGACCACCACGGCGTCACCCATGTA 77682 ||||| ||||| | ||| |||||||| Sbjct 7416993 TAGACAACCACAGAGTCCCCCATGTA 7417018 >seq3 Length=223996068 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || || ||||| ||||| || |||||||| Sbjct 19110714 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCGTTGTTTCTATGGCTTCCAAATTGC 19110772 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 19110773 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 19110830 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 19112382 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 19112441 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 19112442 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 19112497 >seq11 Length=62170480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 44863793 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 44863734 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 44863733 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 44863674 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | |||||||| || || ||||| ||||| ||| Sbjct 44863673 GATGGTGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 44863632 >seq9 Length=94583238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 74670684 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 74670743 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 74670744 AACGAGTTTCAGAGTATCAGCG 74670765 >seq8 Length=90615088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 42675347 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 42675288 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 42675287 AACGAGTTTCAGAGTATCAGCG 42675266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429522723330